PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen01g039790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 76578.5 Da PI: 6.6382 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.6e-23 | 111 | 211 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + Sopen01g039790.1 111 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 199 99**************************999543..445568************************************************..5 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++++el+v+v+r Sopen01g039790.1 200 DDSGELRVGVRR 211 68999*****98 PP | |||||||
2 | Auxin_resp | 101.8 | 8.7e-34 | 237 | 316 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg+ d+++ +W++SkWrsLk Sopen01g039790.1 237 ASHAITTQTRFVVYYKPRT--SQFIVGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGTGDISS-QWSESKWRSLK 316 789***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.15E-39 | 103 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-39 | 105 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.28E-19 | 109 | 211 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 111 | 211 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-21 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-31 | 237 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.4E-13 | 559 | 660 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.36E-14 | 565 | 646 | No hit | No description |
PROSITE profile | PS51745 | 27.102 | 570 | 662 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 685 aa Download sequence Send to blast |
MGTEDLYRDL WKACAGPLVD VPREGERVYY FPQGHIEQLE ASTNQAVNQQ VPQFNLSSKI 60 LCRVFHVQLL AETETDEVYA QITLHPEPEQ EEPSKPDPCP PDLPKRTVHS FCKILTASDT 120 STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW 180 STFVTSKRLV AGDAFVFLRD DSGELRVGVR RLARQQSPIP QSVISSQSMH LGVLATASHA 240 ITTQTRFVVY YKPRTSQFIV GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGT 300 GDISSQWSES KWRSLKIQWD EPASMVRPDR VSPWEIEPFV ASTCVDVAQP GIKSKRPRPL 360 DLPRSEIAVA SAASPFWCPG SGPTLEVSHL GGITEVQSRD NQLFWSSKQS SSLSNGMSNT 420 SCRTHLSGAW QHNMLANGSL NLLRDSIEDN KQLITRSALL DYGSPMSSRV SSGLLHDQVN 480 RGSKHVISSA CRLFGIDLRN NSNNTPSKAK EMLGPNITSN CADEAPVVHD ESEVDKDQNV 540 GHLNPSEEKK QFQLEALPKD TQKQGPTSSR TRTKVQMQGV CVGRAVDLTA LSGYDDLISE 600 LEKIFDIKGE LCPRNKWEVV YTDDEGDMML VGDDPWLEFC KMVRRIFIYS SEEVKKMTPR 660 CKLPILSLEG EGTMPSVDSE LKAEG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-168 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-168 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-168 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldx_A | 1e-168 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldx_B | 1e-168 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 354 | 358 | KRPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061983.1 | 0.0 | auxin response factor 18-like isoform X1 | ||||
Refseq | XP_015061984.1 | 0.0 | auxin response factor 18-like isoform X2 | ||||
Refseq | XP_015061985.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Refseq | XP_015061986.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Refseq | XP_015061987.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Refseq | XP_027772391.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Refseq | XP_027772394.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A3Q7F652 | 0.0 | A0A3Q7F652_SOLLC; Auxin response factor | ||||
STRING | Solyc01g096070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
---|---|---|---|
|