PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g039380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 330aa    MW: 37070.6 Da    PI: 5.4778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g039380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.45.4e-27131191259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v++s+ + +++e+tY+g+H ++
  Sopen01g039380.1 131 EDGFSWRKYGQKDILGASHPRAYYRCTHRntqGCLATKQVQKSDANSTIFEVTYKGRHSCK 191
                       8***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26123192IPR003657WRKY domain
SuperFamilySSF1182909.81E-24129192IPR003657WRKY domain
SMARTSM007741.2E-37130192IPR003657WRKY domain
PfamPF031064.9E-25131191IPR003657WRKY domain
PROSITE profilePS5081121.941131193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKKKLINEL TQGKEFVNQL KNQIIGPLAS PEECDLLIGK ILSTLEKSIS ILNLKALLLE  60
GGINNINNST SSCSSISFLG SNNNNISPKS EVFDSSREKL DKNMVSKKRK KTQQWINQTS  120
ISVNGLEGPC EDGFSWRKYG QKDILGASHP RAYYRCTHRN TQGCLATKQV QKSDANSTIF  180
EVTYKGRHSC KVAQSEIFSL NNQKRQKCNK KQQEEMVIFN SASPNHNAEN FNIITAKEEE  240
VFTAFPYPPA PLHIENIIEE NKFFPDSSAL PLYLTSQNDE FGMEHMILQS SDSDLTELIS  300
TPTSISNSSF GGEGVDYEPE ITFDIEEFFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18131191969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4545850.0GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071040.10.0probable WRKY transcription factor 41
TrEMBLD3YEX50.0D3YEX5_SOLLC; WRKY transcription factor
STRINGSolyc01g095630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-39WRKY family protein