PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g039250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 297aa    MW: 34171.6 Da    PI: 5.0742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g039250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-1994145156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++++GVr+++ +g+W AeIrdp++   ++r++lg+f+taeeAa  +  a+ +l+g+
  Sopen01g039250.1  94 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFDTAEEAAMKYNIAAIQLRGA 145
                       59********.**********654...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.46E-3294151No hitNo description
SuperFamilySSF541715.89E-2195151IPR016177DNA-binding domain
PROSITE profilePS5103222.97295152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2895152IPR001471AP2/ERF domain
SMARTSM003801.0E-3495158IPR001471AP2/ERF domain
PfamPF008478.5E-1295144IPR001471AP2/ERF domain
PRINTSPR003676.0E-1196107IPR001471AP2/ERF domain
PRINTSPR003676.0E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESQKIKKKL VHKTITTKYD HHNKWTPKVV RICYTDCDAT DSSSDDDDDE RNRVKKYVTE  60
IKFEKKMAAA DVRKSLNSNK KKKVIDSKRD ENVKKFRGVR QRPWGKWSAE IRDPVKKTRV  120
WLGTFDTAEE AAMKYNIAAI QLRGADAIIN FIETPLPKEK ENIIITSVSD YDSTGECENL  180
CSPTSVLRQN NNNNNNDKDN EDAIGIDTKI MNDESKKMEI DENGFMFDDN LPLMDQSFLK  240
DFFDFRSPSP LMDDVLLPGF SDGMGLLPEV LSIHGNKMLD EDLETCKWAN DFFQDVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2294151159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085764.10.0pathogenesis-related genes transcriptional activator PTI6
SwissprotQ9SUE34e-42CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A3Q7ELA90.0A0A3Q7ELA9_SOLLC; Uncharacterized protein
STRINGSolyc01g095500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-40cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]