PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen01g037680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 280aa MW: 30199.9 Da PI: 10.7645 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.9 | 1.6e-29 | 69 | 140 | 9 | 66 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 ++ Tkv+g +RR+R++a+caar+F+L++eLG+++d++ti+WLl+ a+p+i+ +tgt + Sopen01g037680.1 69 ADRLTKVDGGGRRIRIPATCAARVFQLTRELGHKTDGETIQWLLERAEPSIISATGTgvtavsingttkipT 140 69*******************************************************766666555544421 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.172 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.6E-24 | 69 | 148 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MESKNIKFFT AAPPSAWRRQ VAPPLISPKQ EPHDLAEKVP TPSIIKVTLP TPKPRPSVPP 60 QLPLRGNDAD RLTKVDGGGR RIRIPATCAA RVFQLTRELG HKTDGETIQW LLERAEPSII 120 SATGTGVTAV SINGTTKIPT TDNNDTLTGK RKRCDCVHVK LNDFKQRNNH PITTIRENDA 180 KLPNNMATIL APVMSIIPPQ AIMPVGSMFP VPARMNSSMA APSTVWLIQQ TPLIPSTRQS 240 AAQVNCVSVR PAATFFGVPN ASLIPASATN VCSSHSPGHC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062294.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-36 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | M1DWQ3 | 1e-165 | M1DWQ3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095626 | 1e-166 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-38 | TCP family protein |