PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g037540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 296aa    MW: 33086.2 Da    PI: 8.6509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g037540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-203484256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa a+++a+++l+ge
  Sopen01g037540.1 34 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAAHAYDEAARALRGE 84
                      799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-153484IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203491IPR016177DNA-binding domain
SMARTSM003802.6E-363497IPR001471AP2/ERF domain
CDDcd000187.43E-313491No hitNo description
Gene3DG3DSA:3.30.730.101.1E-283492IPR001471AP2/ERF domain
PROSITE profilePS5103220.2313491IPR001471AP2/ERF domain
PRINTSPR003679.1E-73546IPR001471AP2/ERF domain
PRINTSPR003679.1E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATHLENTKT TITTNTNTTK SSSTEPKKSS ITRKFVGVRQ RPSGRWVAEI KDSSQRVRLW  60
LGTYDTPEEA AHAYDEAARA LRGENARTNF ASTTPNSDMD QSNILHSKNG LSFSSIKAKL  120
SKNLQSIMAR NSENKSSSSK SITRVSDHFT FARIFHFKNN YDQQYQNHRH VDMNKVVQPS  180
IRVLPHDVTD KNNNDNNNNN DSSWENSSSV SDCSSEWAAF RQLGLDCDNY GSDGSEYFVG  240
SDPLMAGWIS SPDIMSSTST NEGSSRSKRF KVSSSVMVPP TFTESPLHDA QNYVPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1334901471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081483.10.0ethylene-responsive transcription factor ERF010-like
TrEMBLA0A3Q7EKU01e-170A0A3Q7EKU0_SOLLC; Uncharacterized protein
STRINGSolyc01g091760.2.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-20related to AP2 11