PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen01g037400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 821aa MW: 89822.9 Da PI: 6.2812 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.8e-21 | 126 | 181 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k Sopen01g037400.1 126 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 181 688999***********************************************999 PP | |||||||
2 | START | 198.5 | 3e-62 | 333 | 557 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+a+ +ep+W++s e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + + Sopen01g037400.1 333 ELALAAMEELVKMAQTDEPLWFRSIeggrEILNHEEYIRTFTPCIGmrpnsFISEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaRTS 424 5899**************************************9999********************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg+++++++ng+skvtw Sopen01g037400.1 425 TTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFPNSRRLPSGCVVQDMPNGYSKVTW 517 **************************************************************999**************************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh+++++ h l+r+l++ g+ +ga++wvatlqrqce+ Sopen01g037400.1 518 VEHAEYEEGANHHLYRQLISAGMGFGAQRWVATLQRQCEC 557 **************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 112 | 177 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-20 | 113 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 123 | 183 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-19 | 124 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.34E-19 | 125 | 183 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 126 | 181 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 158 | 181 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.74 | 324 | 560 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-31 | 326 | 557 | No hit | No description |
CDD | cd08875 | 1.78E-122 | 328 | 556 | No hit | No description |
SMART | SM00234 | 5.5E-48 | 333 | 557 | IPR002913 | START domain |
Pfam | PF01852 | 6.9E-54 | 333 | 557 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.19E-23 | 576 | 807 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 821 aa Download sequence Send to blast |
MNFGGFLDNN SGGGGARIVA DIPFNHNSSS SNNDNKNNMP TGAISQPRLL PQSLAKNMFN 60 SPGLSLALQT GMEGQSEVTR MAENYEGNNS VGRRSREEEP DSRSGSDNLE GASGDEQDAT 120 DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM 180 KTQLERHENS ILRQENDKLR AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR 240 LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP 300 DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG 360 REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL ALVETLMDSN KWAEMFPCLI 420 ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS 480 IDTIRETSGA PTFPNSRRLP SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM 540 GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS 600 TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL 660 RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGALVV 720 YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV 780 AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALQCE S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ222185 | 0.0 | GQ222185.1 Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059298.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A3Q7EKE6 | 0.0 | A0A3Q7EKE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g091630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1626 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|