PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g037180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 276aa MW: 28241.1 Da PI: 7.5785 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.3e-39 | 43 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lq+q+++l+a Sopen01g037180.1 43 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVLTICFEAQARLRDPVYGCVAHIFALQHQVANLQA 135 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 el++l+++ Sopen01g037180.1 136 ELSYLQAH 143 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.668 | 42 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 43 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSSNNPSSST GGVSAPGGGV TSGSTSSGGG GGGGGGGGGG GGPCGACKFL RRKCVAGCIF 60 APYFDSEQGA AHFAAVHKVF GASNVSKLLL HIPVHKRLDA VLTICFEAQA RLRDPVYGCV 120 AHIFALQHQV ANLQAELSYL QAHLTTLELP TPPPLPPPPP PPPQQPQTML HQPSLTIADL 180 PTAGPSLPAA YDLSSLFDPM VIQPSWAMQQ QPRPPPPLPL DPRHFGGARA PMDMSPSTGG 240 GGGGGDLQEL ARELLHRHGS ATVPCTESSA LPPQTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 39 | 144 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 39 | 144 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071271.1 | 0.0 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-79 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A3Q7EKM9 | 1e-134 | A0A3Q7EKM9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g091420.1.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-66 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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