PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g036680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 769aa    MW: 83565.4 Da    PI: 5.7395
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g036680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.13.9e-1044097682374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       +++L+++Ae v++g+  laq +Larl+++ sp g+p+ R+a+y +eAL+  l+ ++++l  ++++s+ s    + ++ a+k fse+sP+ +f+
  Sopen01g036680.1 409 IDQLFKAAELVQTGNPVLAQGILARLNHQLSPIGKPFYRAAFYCKEALQLLLHANTNNLNPSMASSPFS---LIFKIGAYKSFSEISPVAQFA 498
                       689***************************************************999999888888888...********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++t+Nqa+le ++g er+Hi+Dfdi++G+QW++L+q+La R++g+p+l+iT+++sp+++++ el  t+e+L +fA+e+++ fef++l  ++l+
  Sopen01g036680.1 499 NFTCNQALLEVLDGFERIHIVDFDIGYGGQWASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRENLIHFASEINMAFEFEILSIDSLN 591
                       **************************************************************************************9777666 PP

              GRAS 188 dleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +   ++L   v+++Ea+aVnl ++  + +  ++sl+     vL++vk+lsP++vv v++ +d+++ +F +++++al+ ys l++sl+a    +
  Sopen01g036680.1 592 ST-SWSLppLVSENEAIAVNLPVSSLSSY--QLSLPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFPNHVIQALQSYSNLLESLDAV-NVN 676
                       65.4555334788**********877776..555555....*********************************************665.346 PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++ +k+Er+ll++ i+ +v+ + ++     e+ ++Wr+ + ++GF p++ls+++++qa++++++++++g++ve+++ slvl+W++++L+s+S
  Sopen01g036680.1 677 FDALQKIERFLLQPGIERIVMGRFRS----PEKTQHWRSLFLSSGFAPLSLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISAS 765
                       6999****************998877....9************************************************************** PP

              GRAS 372 aWr 374
                       aWr
  Sopen01g036680.1 766 AWR 768
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.416382748IPR005202Transcription factor GRAS
PfamPF035141.3E-101409768IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MKGMPLPFEF EGKGVLELDV LFNKNSILNS WNNHNTSKES SSCCYFVNSP SAVLDTIRSP  60
RPINSSSTLS SSLGGGGGGG GTASTDTAGG GVAAVSANPS SKWQQQQQDN TTATSSNVGA  120
ESELQQVQPP SSLEMGAAAT GGDKCAMEEW EGGLSESVMA SPCQEQSILR WIMGDVDDPS  180
MANLNKVLQV SGTGDYEFNG GFGVVDQGFG VDPVGQIGSF MPAISSSVSM SSSSFPTNRM  240
NSDKIGLVSN PPTNLPQNPI FPSLSNNLGP IAFGQTQQQP FESTDLKPQT FNSQFLINQH  300
QTQIPQNPSF LLPLPFAQQE QNLVLPPQAK RHNPGTMGGL EPGSQISKGL FLDAGHQQPT  360
PSQGIAHQLQ LLPHFRPGAM GTKPKMVGEE MAQFHQLQQQ QQQQQQAIID QLFKAAELVQ  420
TGNPVLAQGI LARLNHQLSP IGKPFYRAAF YCKEALQLLL HANTNNLNPS MASSPFSLIF  480
KIGAYKSFSE ISPVAQFANF TCNQALLEVL DGFERIHIVD FDIGYGGQWA SLMQELALRS  540
GGAPTLKITA LASPSTHDQL ELGLTRENLI HFASEINMAF EFEILSIDSL NSTSWSLPPL  600
VSENEAIAVN LPVSSLSSYQ LSLPLVLRFV KQLSPRIVVS VDRGCDRTDL PFPNHVIQAL  660
QSYSNLLESL DAVNVNFDAL QKIERFLLQP GIERIVMGRF RSPEKTQHWR SLFLSSGFAP  720
LSLSNFTESQ AECVVKRTPV RGFHVEKRQS SLVLCWQRKE LISASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-354087684375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062026.10.0scarecrow-like protein 22
TrEMBLA0A0V0IWJ20.0A0A0V0IWJ2_SOLCH; Putative scarecrow-like protein 22-like
STRINGSolyc01g090950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-145GRAS family protein