PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g036310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 397aa    MW: 45045.4 Da    PI: 8.9405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g036310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-1384129146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g+W +eEd+ l++ vk++G+++W++I ++  + Rt+k+c++rw +
  Sopen01g036310.1  84 KGPWKEEEDQVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 129
                       79*************************8887799**********87 PP

2Myb_DNA-binding461.2e-14140179344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                       ++++eE+   +++ +q+G++ W++Ia +m+ gRt++++k++w
  Sopen01g036310.1 140 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 179
                       79******************.*********.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2177132IPR009057Homeodomain-like
PROSITE profilePS5129422.69379135IPR017930Myb domain
SuperFamilySSF466891.94E-2882179IPR009057Homeodomain-like
SMARTSM007178.6E-1283133IPR001005SANT/Myb domain
CDDcd001671.28E-1186131No hitNo description
PfamPF139212.1E-1287137No hitNo description
Gene3DG3DSA:1.10.10.602.9E-18133185IPR009057Homeodomain-like
PROSITE profilePS5129418.003136187IPR017930Myb domain
SMARTSM007174.9E-13137185IPR001005SANT/Myb domain
CDDcd001671.51E-10140179No hitNo description
PfamPF002496.5E-13140179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MHLKHHHHQV QLNYLPRVVI LEFLLKVALA HQRAKATQEL SYAPEASSPS SSVKLSTTSR  60
NTRVLVKGCI GASTCKVKMS EIKKGPWKEE EDQVLIKHVK KYGPRDWSSI RSKGLLQRTG  120
KSCRLRWVNK LRPNLKNGVK FSAEEERTVI ELQAQFGNKW ARIATYMPGR TDNDVKNFWS  180
SRQKRLAKIL RNSVPQPSKP QKNISKEAPE LLKVSSVEEP KLNSSADERA LVVSQHCSSS  240
YTNNFDTINM VPLPELVNST SLPFDQELPP LEFTPSEKRI CIWPQFPLPF PHIPVQTNFG  300
QPLEHQELPM KLEDNDFLDY FGQLSASDIG GNVQVPLAPS CSSGQDQRSS EIGVKREMAE  360
IGVKREMEYP LTPDSFIDDF PLDMFDYIDP LQSPSGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-287618519126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086001.10.0transcription factor DUO1-like isoform X1
TrEMBLA0A3Q7F4170.0A0A3Q7F417_SOLLC; Uncharacterized protein
STRINGSolyc01g090530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.18e-76MYB family protein