PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g036310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 397aa MW: 45045.4 Da PI: 8.9405 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 84 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd+ l++ vk++G+++W++I ++ + Rt+k+c++rw + Sopen01g036310.1 84 KGPWKEEEDQVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 129 79*************************8887799**********87 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 140 | 179 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +m+ gRt++++k++w Sopen01g036310.1 140 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 179 79******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 77 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.693 | 79 | 135 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-28 | 82 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-12 | 83 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-11 | 86 | 131 | No hit | No description |
Pfam | PF13921 | 2.1E-12 | 87 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 133 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.003 | 136 | 187 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 137 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-10 | 140 | 179 | No hit | No description |
Pfam | PF00249 | 6.5E-13 | 140 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MHLKHHHHQV QLNYLPRVVI LEFLLKVALA HQRAKATQEL SYAPEASSPS SSVKLSTTSR 60 NTRVLVKGCI GASTCKVKMS EIKKGPWKEE EDQVLIKHVK KYGPRDWSSI RSKGLLQRTG 120 KSCRLRWVNK LRPNLKNGVK FSAEEERTVI ELQAQFGNKW ARIATYMPGR TDNDVKNFWS 180 SRQKRLAKIL RNSVPQPSKP QKNISKEAPE LLKVSSVEEP KLNSSADERA LVVSQHCSSS 240 YTNNFDTINM VPLPELVNST SLPFDQELPP LEFTPSEKRI CIWPQFPLPF PHIPVQTNFG 300 QPLEHQELPM KLEDNDFLDY FGQLSASDIG GNVQVPLAPS CSSGQDQRSS EIGVKREMAE 360 IGVKREMEYP LTPDSFIDDF PLDMFDYIDP LQSPSGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 76 | 185 | 19 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086001.1 | 0.0 | transcription factor DUO1-like isoform X1 | ||||
TrEMBL | A0A3Q7F417 | 0.0 | A0A3Q7F417_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g090530.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 8e-76 | MYB family protein |