PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g035660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 329aa    MW: 37233.4 Da    PI: 9.4533
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g035660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21.1e-1837129186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf..erspkqCkekwenlnkrykkikegek....krtsessstcpyfdqle 86 
                       +W+++e+ aLi+a+r+++ +lr+g+l++++W+ev++ + ++ ++   ++++qC++k+e+l+kry+++ +++      r+ +  s +++f++++
  Sopen01g035660.1  37 CWSHDETIALIDAYRDKWYSLRKGNLRANHWQEVAEDVgSRCPVdpPKTAVQCRHKMEKLRKRYRAEIQRAApyggARSHRYCSAWVHFKRMD 129
                       8*************************************7444554589*****************9998875111133445556777888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-2036131No hitNo description
PROSITE profilePS500906.2843897IPR017877Myb-like domain
SMARTSM005951.7E-1145136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATFSPSTQD FSTTPSQILS SSNVTVAVPS RRLPPPCWSH DETIALIDAY RDKWYSLRKG  60
NLRANHWQEV AEDVGSRCPV DPPKTAVQCR HKMEKLRKRY RAEIQRAAPY GGARSHRYCS  120
AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HTGNRSSFQG  180
VVSNGGGGFR IRIPGMPGLA PPMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR  240
VVGEGVREKK KEDPMVEMVA AIKVLGDGFV RMERMKMDAA RELERMRMEM EMKRTEMILE  300
SQQRVVEAFA QALSEEKYKK AKRVPTPEC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059985.10.0trihelix transcription factor ASIL2
TrEMBLA0A3Q7EJF00.0A0A3Q7EJF0_SOLLC; Uncharacterized protein
STRINGSolyc01g088820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-66Trihelix family protein