PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g034890.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 32511.8 Da    PI: 5.9156
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g034890.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k ien  nrqvtfskRr+g+lKKA ELSvLCd evaviifsstgkl+e+ss
  Sopen01g034890.2  9 KLIENLNNRQVTFSKRRAGLLKKAGELSVLCDSEVAVIIFSSTGKLFEFSS 59
                      569**********************************************96 PP
2K-box57.46.2e-2092183797
             K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       +s ++++  ++ q+e++ Lk+e+ +L+ +q +llG+dL+ + l+eL+ Le+qL+++l  i+++K+ell++q+e+++k+e++   e ++Lr++
  Sopen01g034890.2  92 QSqQQTHVLKQEQKEVDSLKDELAKLKIKQQRLLGKDLNGMGLNELRLLEHQLNEGLLAIKERKEELLIQQLEYSRKQEERSALECETLRRQ 183
                       333555567889**************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-31274IPR002100Transcription factor, MADS-box
CDDcd002657.15E-40275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-1595183IPR002487Transcription factor, K-box
PROSITE profilePS5129711.638100190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRGKIDIKL IENLNNRQVT FSKRRAGLLK KAGELSVLCD SEVAVIIFSS TGKLFEFSST  60
SMKQTLSRYN KCVASTDTSA VEKKSEDNEQ PQSQQQTHVL KQEQKEVDSL KDELAKLKIK  120
QQRLLGKDLN GMGLNELRLL EHQLNEGLLA IKERKEELLI QQLEYSRKQE ERSALECETL  180
RRQGGSFLTQ LLLPSHELQV EELRGLFPLS ASLPPPFLEY DRPLEKKYSI LKESKESLDS  240
DTACEDGVDD EDSNTTLQLG LPTICRKRKR TEQESPSSNS ENQVGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21169169MEF2C
5f28_B2e-21169169MEF2C
5f28_C2e-21169169MEF2C
5f28_D2e-21169169MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142200.0BT014220.1 Lycopersicon esculentum clone 133400R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066551.10.0MADS-box transcription factor 23 isoform X1
TrEMBLM1A8X30.0M1A8X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000174160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.17e-60AGAMOUS-like 15