PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g034190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39678.1 Da PI: 6.1816 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + G g+W+ Iar g+ R++k+c++rw +yl Sopen01g034190.1 27 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.3e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++ Sopen01g034190.1 80 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 123 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.552 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.08E-28 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-9 | 30 | 74 | No hit | No description |
PROSITE profile | PS51294 | 24.531 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 82 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-10 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ 60 RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF 120 WNSTIKKRLK NNNNNNNNST PSPNTSDSSI GGIFPMQGHD VNNVMATLCM DNSSSTTSGS 180 SMQAMVPFNP FPQLDNTSYD ISGLVGPVNL GQFGCSGGDG GFLDYGVVET YSMMGLGSDE 240 FSIPSLEGVH NKSTTTTMGE SNNNSNVDFS SNNIVSGAND YDSMIEKKNN TNVNNNNQHL 300 MNMSGISDQS LKVEDYMVGF GNHHHWHGES LRIGEFDWEG LLANVSSLPY LDFQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 25 | 129 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072060.1 | 0.0 | transcription factor MYB46-like | ||||
TrEMBL | M1A9C0 | 0.0 | M1A9C0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g087130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 2e-68 | myb domain protein 46 |