PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g033480.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 332aa    MW: 36235.1 Da    PI: 6.6272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g033480.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-18154208256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sopen01g033480.1 154 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 208
                       778899***********************************************98 PP
2HD-ZIP_I/II1278e-41154244192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk
  Sopen01g033480.1 154 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-ALK 244
                       69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-18127211IPR009057Homeodomain-like
SuperFamilySSF466891.11E-18142211IPR009057Homeodomain-like
PROSITE profilePS5007117.184150210IPR001356Homeobox domain
SMARTSM003891.9E-15152214IPR001356Homeobox domain
CDDcd000865.85E-16154211No hitNo description
PfamPF000463.5E-15154208IPR001356Homeobox domain
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
PfamPF021835.2E-11210244IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-26210253IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALGINSSSE RVEQDIEDEE NNTSEEGTNN TLPVQLDLLP LVPLPNPPTN LPQSHHWSSD  60
NGSSENGSSG NGGLPAARGF DVNRLPAAGM DEVSSPNSVA SSFRMDFGLF KSCVNIVGVG  120
NKRNSESAGG NDGGEPERAS SRASDDDENG ANTRKKLRLS KEQSAYLEES FKEHHTLNPK  180
QKLALAKQLS LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTDEN RRLHKELQEL  240
RALKTSNPFY MQLPATTLTM CPSCERVAST TSAATAPPIT ALGTTTTTAT TATTTTSDSI  300
PKAIPFLNSR PRFFPFTTTN NNPNHSHQSA AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158TRKKLRL
2202210RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066232.10.0homeobox-leucine zipper protein HOX11-like
SwissprotQ6YPD09e-88HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A3Q7F0M40.0A0A3Q7F0M4_SOLLC; Uncharacterized protein
STRINGSolyc01g073910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-75homeobox from Arabidopsis thaliana