PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g032710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 469aa    MW: 52890.7 Da    PI: 5.5603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g032710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14266313254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + Er+RR ++N+++  Lr+++P++      K++ a+i++ A++YI++L
  Sopen01g032710.1 266 ETKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIDYINEL 313
                       689*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-15260328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-12265315No hitNo description
PfamPF000108.3E-12266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13267325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYVEESVCYD PATHHVQHEG LTEDVFVIQE HTYHNNNDSS QQDVAAAAAA AALEMEFQHQ  60
LNHEMEQCYN NNNTHNNNNN IVNEGLSCDQ SNWGEMNFPP YQNQQHNDNG NSNNNFHQQD  120
FSNPISEPPY LTTPDLLNMF PLPRCTQSSL LPQKSPNLLT SLGLIGDIDG GGASTSRAIY  180
DPSSLVLPLN LPPQPPLLRE LFHSFPHGYG LRNLRSNNNT SFFNGLEETD QGLYQENGET  240
RPFDNGIFEF SGGMNDIAKN REGIKETKHF ATERQRRVHL NDKYKALRSM VPNPSKNDRA  300
SIVKDAIDYI NELKRGVNEL KLMVEKKRCN KDRIKRQKTG GGSISMDGSD AKQIMDEVEQ  360
SYNGNSLRSS WLQRRSKNTE VDVRIVDDEV TVKLVQQKRI NCLFFASKVL DDLQLDLHHV  420
AGGLIGDYYS FLFNSKISEG STVYASAIAK KLIEVVDIQY AAIAPTNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769873.10.0transcription factor bHLH91-like
TrEMBLM0ZNJ40.0M0ZNJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000044970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-74bHLH family protein