PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g031340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 109aa    MW: 12749.4 Da    PI: 5.1631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g031340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407e-13251041599
                       -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        l++p + ++++ +++ +  ++ l+  +g + W+++   r  ++++++ +GWkeF+ +n+++   ++ F +dg+++f  +v++f+k
  Sopen01g031340.1  25 ELRIPSTLVNRIREETMG--EMLLKCGDGdKYWNITT--REDGNSMYFHGGWKEFALENHIQMTQVLFFNYDGSKTF--TVRIFNK 104
                       478999999999766555..677777777699*****..999999**************************998888..9*99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-1711106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1711105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4211105IPR003340B3 DNA binding domain
CDDcd100175.90E-913103No hitNo description
SMARTSM010197.0E-1014105IPR003340B3 DNA binding domain
PfamPF023623.0E-1124104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSNFGGNPND ELSFYKIVLD PHMEELRIPS TLVNRIREET MGEMLLKCGD GDKYWNITTR  60
EDGNSMYFHG GWKEFALENH IQMTQVLFFN YDGSKTFTVR IFNKNGLEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-139HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089472.22e-77B3 domain-containing protein Os11g0197600-like
TrEMBLA0A3Q7F0Z81e-72A0A3Q7F0Z8_SOLLC; Uncharacterized protein
STRINGSolyc01g079560.2.12e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-13B3 family protein