PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g031140.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 26546.6 Da PI: 5.1823 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.5e-30 | 53 | 111 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+ Sopen01g031140.2 53 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFIITYTSSHNHP 111 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 44 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-26 | 49 | 113 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 52 | 112 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.423 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 54 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRSKPPKSQ SKTSRLLQPQ FIASKNRKMA QKVVMTVQME AKSLKQKNEG PPSDCWSWRK 60 YGQKPIKGSP YPRGYYRCSS SKGCSAKKQV ERCSKDASLF IITYTSSHNH PGPNLPKDSV 120 KQEPIVDQHV SLEDNNDEDD DDNDDTKSCK TPLNSTTAST SIPQGILEEN LFTDNFLGTI 180 SYDDFLPLSY PQLMKFPKSE LSEENDFYDE LGELELPPSS TSFAGIFEEA ILVDPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-20 | 54 | 114 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 8e-20 | 54 | 114 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055814.1 | 1e-176 | probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | M1AI28 | 1e-153 | M1AI28_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g079360.2.1 | 1e-156 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-34 | WRKY DNA-binding protein 35 |