PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g031040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 35088 Da PI: 6.8919 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 161 | 218 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr+YYrCt a+C+vkk+ver+ +dp++v++tYeg+H+h+ Sopen01g031040.1 161 EDGYRWRKYGQKAVKNSPFPRNYYRCTNATCNVKKRVERCFSDPSTVVTTYEGKHTHP 218 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-34 | 145 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-29 | 152 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.617 | 155 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-38 | 160 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-25 | 161 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEDHHPMYFI DNNSFGVTNN HSLISDYNIN TSSLGFMELL GFHQDFCSVF ELPKEENHYP 60 AACVSEEEIK PPSSSVAAAE KQKSSTTTVV ATGNVLNTPS TPNCSSISSE GHGDADGEVE 120 NHEQKNTNAK QQLKAKKTVS QKKQKEPRFA FMTKSEVDFL EDGYRWRKYG QKAVKNSPFP 180 RNYYRCTNAT CNVKKRVERC FSDPSTVVTT YEGKHTHPSP MNTMISRPNC YPINPLLPSL 240 GAYTLPMQFN TNQSFNDNLT TSSNLAFNNQ LDHAAFVAQG RRFCSTNEIL GDQENDLQNL 300 MPSAVLKHDY NR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 153 | 220 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 153 | 220 | 10 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU056916 | 0.0 | EU056916.1 Solanum tuberosum WRKY transcription factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068862.1 | 0.0 | WRKY transcription factor 23 | ||||
Swissprot | O22900 | 7e-50 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A3Q7EHD6 | 0.0 | A0A3Q7EHD6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g079260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-45 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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