PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g030050.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 983aa MW: 109159 Da PI: 6.1987

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g030050.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9e-41	134	211	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Sopen01g030050.1 134 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 211 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-32	130	196	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	132	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.8E-38	133	214	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.6E-30	135	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.63E-7	754	867	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.9E-5	756	868	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.15E-6	757	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MGGTDLRGLG KRSLEWDLTD WKWDGDLFIA TPLQQNPSNY QSRQFFPVET GNLASSNSSS 60 SCSDEVNHGM EQQRRELEKR RRVIVVDEDD SGPLSLKLGG QGEPAADAGR EMSNWDGAAG 120 KRTKLAAPAA TRAVCQVDDC GTDLSKAKDY HRRHKVCEMH SKASRALVGN VMQRFCQQCS 180 RFHALQEFDE GKRSCRRRLA GHNKRRRKTQ SETVANNNSL NDGQTSGYSL MSLLKILSNM 240 HSNGANHTED QDLLSHLLRS LASQGPTNGD KSLSGLLQES SNLLNNRSIL RNPEIASLIS 300 NGSQAPPRPK ERQFTNSAAE MPQKRLEDAR TASSQSPGIL FPIQSNSQAY TPGRESTTGR 360 SKLIDFDLND AYVDSDDCGD DIDRSPVPEC PSWLQQDSHQ SSPPQTSGNS DSASAQSPSS 420 SSGDNQNRTD RIVFKLFGKG PSDFPFVVRA QILDWLSHSP TEIESYIRPG CVVLTIYLRL 480 PESAWEELSY DLSSSLSRLL DVHGGDSFWT KGWIYIRVQN QIAFVCDGQV LLDMSLPCVS 540 NDDSTLLSVR PIAVPVSDRV QFLVKGYNLT KPSTRLLCSL EGNYLDPEAD NEVEKQVAGG 600 DKDDKLQSLN FTCSIPAVGG RGFIEVEDHG VSNSFFPFII AEEDVCSEIR MLESDLELTS 660 LDYVKGQTNN IEARNQAMDF IHELGWLLHR NNLRARLEHF GPNAVLHPLK RFKWLVEFSV 720 DHEWCAVVKK LLNILLDGTV GGDDSSLKYA LTEMGLLHKA VRRNSRPLVE LLLTYTPTNV 780 ADELCCEYQS LVGVGGQFLF RPDCVGPGGL TPLHIAAGID GYEDVLDALT DDPGKVAIEA 840 WKNTRDSTGF TPEDYARLRG HYSYIHLVQR KISKKANSGH IVVDIPRVPS VVENSNQKDE 900 VCATTSLEIS MTERKAIPRP CRLCDRKLAY GSRSRSLLYR PAMFSMVAMA AVCVCVALLF 960 RGSPEVLYIF RPFRWEMVDF GTS

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MGGTDLRGLG KRSLEWDLTD WKWDGDLFIA TPLQQNPSNY QSRQFFPVET GNLASSNSSS  60
SCSDEVNHGM EQQRRELEKR RRVIVVDEDD SGPLSLKLGG QGEPAADAGR EMSNWDGAAG  120
KRTKLAAPAA TRAVCQVDDC GTDLSKAKDY HRRHKVCEMH SKASRALVGN VMQRFCQQCS  180
RFHALQEFDE GKRSCRRRLA GHNKRRRKTQ SETVANNNSL NDGQTSGYSL MSLLKILSNM  240
HSNGANHTED QDLLSHLLRS LASQGPTNGD KSLSGLLQES SNLLNNRSIL RNPEIASLIS  300
NGSQAPPRPK ERQFTNSAAE MPQKRLEDAR TASSQSPGIL FPIQSNSQAY TPGRESTTGR  360
SKLIDFDLND AYVDSDDCGD DIDRSPVPEC PSWLQQDSHQ SSPPQTSGNS DSASAQSPSS  420
SSGDNQNRTD RIVFKLFGKG PSDFPFVVRA QILDWLSHSP TEIESYIRPG CVVLTIYLRL  480
PESAWEELSY DLSSSLSRLL DVHGGDSFWT KGWIYIRVQN QIAFVCDGQV LLDMSLPCVS  540
NDDSTLLSVR PIAVPVSDRV QFLVKGYNLT KPSTRLLCSL EGNYLDPEAD NEVEKQVAGG  600
DKDDKLQSLN FTCSIPAVGG RGFIEVEDHG VSNSFFPFII AEEDVCSEIR MLESDLELTS  660
LDYVKGQTNN IEARNQAMDF IHELGWLLHR NNLRARLEHF GPNAVLHPLK RFKWLVEFSV  720
DHEWCAVVKK LLNILLDGTV GGDDSSLKYA LTEMGLLHKA VRRNSRPLVE LLLTYTPTNV  780
ADELCCEYQS LVGVGGQFLF RPDCVGPGGL TPLHIAAGID GYEDVLDALT DDPGKVAIEA  840
WKNTRDSTGF TPEDYARLRG HYSYIHLVQR KISKKANSGH IVVDIPRVPS VVENSNQKDE  900
VCATTSLEIS MTERKAIPRP CRLCDRKLAY GSRSRSLLYR PAMFSMVAMA AVCVCVALLF  960
RGSPEVLYIF RPFRWEMVDF GTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	134	208	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015055592.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A3Q7EGS2	0.0	A0A3Q7EGS2_SOLLC; Uncharacterized protein
STRING	Solyc01g068100.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]