PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g029490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 36288.6 Da PI: 4.9987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.2e-18 | 56 | 104 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Sopen01g029490.1 56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104 66******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-32 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.613 | 55 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-28 | 55 | 111 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 56 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 56 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-20 | 56 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-11 | 58 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MSSSNSTPIS SDNQLPFGMF EPIRTPTGYS WLQRNTALCQ PSEKRGRRKQ TEPGRFLGVR 60 RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTSDSANT 120 NFPSLISPFE HVQNMLNPNN THFNFNTHIN DNNVIKNTKT KTTTTTNSDE SSSYGSSPNE 180 DNSFLFLSDN MNHHNNNNTN SGYLLDCIVP DSCLRPPQQQ PSSTPQSKMN GEIENNDVDT 240 NGFFDMSSSW ESSCELSAMT MNHSSNNMNH QMMDDVADGS YYYPNMEINN YDHLMMMPNH 300 ETTNDAAATF GDVEFGYTTL F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-20 | 46 | 111 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088001.1 | 0.0 | ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A3Q7EZV2 | 1e-179 | A0A3Q7EZV2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g067540.1.1 | 1e-179 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9307 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-47 | ERF family protein |