PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 197aa    MW: 21469.2 Da    PI: 8.3683
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-1994127134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+nCg+ kTplWR+gp g+k+LCnaCG++ rkk+
  Sopen01g026800.1  94 CVNCGAMKTPLWRSGPAGPKSLCNACGIRSRKKK 127
                       ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-1388138IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.61188124IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-1391128No hitNo description
Gene3DG3DSA:3.30.50.104.6E-1693128IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
PfamPF003201.4E-1694128IPR000679Zinc finger, GATA-type
CDDcd002026.46E-1594128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLTDKVIGS EEVEMATPEV MISSEIEVKA AEMMISPEIK AKAAEMMISP EIEVKAAEMM  60
ISPEIKAKAP EVISSEIQMK TPEVISSEIQ MKNCVNCGAM KTPLWRSGPA GPKSLCNACG  120
IRSRKKKRDL LGLKKDDKKT KKSPANSASS SNVDKKKQKI KSAVKNADAI PIHWTELDDV  180
EQAAFLLMCL SCSSVRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769875.11e-138GATA transcription factor 15
TrEMBLA0A3Q7EYP79e-83A0A3Q7EYP7_SOLLC; Uncharacterized protein
STRINGSolyc01g060490.2.19e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-15GATA transcription factor 16