PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g026530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 327aa    MW: 36102.4 Da    PI: 6.7174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g026530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.7e-1255144598
                       -..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
                B3   5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                       lt+s+v     l+lpkk  +e    g          + +  g++W++ +   + + +y +++GWk F+++n+LkegD +vF+l+  + ++ e+
  Sopen01g026530.1  55 LTKSSVKPIYSLYLPKKMNKELpfaG-A------PAVLTYGGKKWNLFY--GGAKTKYKFSSGWKIFADDNNLKEGDGLVFELSeCNpDKIEF 138
                       77888888889999999988886533.3......2566789********..9******************************98666677777 PP

                       EEEEE- CS
                B3  93 vvkvfr 98 
                       +++++r
  Sopen01g026530.1 139 KIQILR 144
                       777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1447145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1547143IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5951146IPR003340B3 DNA binding domain
PfamPF023622.9E-1054142IPR003340B3 DNA binding domain
CDDcd100172.06E-1654144No hitNo description
SMARTSM010190.003155146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MARSRLSRPY QGGSSSEQVS NQKGEFIMTE STGSIEINKD EILPLSDKPY VGMVLTKSSV  60
KPIYSLYLPK KMNKELPFAG APAVLTYGGK KWNLFYGGAK TKYKFSSGWK IFADDNNLKE  120
GDGLVFELSE CNPDKIEFKI QILREDFPAE LVPEDVEAAL VHEPSVVTKD PVFPEMSNTI  180
VNPNFHDPNA SVHDEEHSAL KVNYAATLNK AWYEALGFAH KGLFGVCHQM HFIHLEMNVT  240
TPRLAVLLLA RILDLNLEDK MVGPGGLISG LPCPSIELGL AIQSKEWAAG FLKWSGLREA  300
GFTEQRTVPA LCSGRITSRC PPKSNNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-152HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080050.11e-111B3 domain-containing protein Os04g0386900-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154