PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g026290.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 920aa MW: 104080 Da PI: 8.0465

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g026290.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.9	2.8e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +e k rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf Sopen01g026290.1 30 EEaKMRWLRPNEIHAILCNYKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAHGEDLPTF 122 45599************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ Sopen01g026290.1 123 VRRCYWLLDKSLEHIVLVHYRETQ 146 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.849	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-76	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.5E-46	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.5E-5	369	467	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.94E-12	378	465	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.95E-18	563	676	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.3E-18	563	676	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.84E-16	563	673	No hit	No description
PROSITE profile	PS50297	16.839	572	665	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.476	614	646	IPR002110	Ankyrin repeat
SMART	SM00248	4.8E-7	614	643	IPR002110	Ankyrin repeat
Pfam	PF13637	3.6E-7	616	665	No hit	No description
PROSITE profile	PS50096	7.181	761	787	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.61E-5	772	848	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	18	776	798	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.87	777	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.23	779	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0019	799	821	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.146	800	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.6E-5	801	821	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.61E-5	877	904	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	53	877	899	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.95	879	907	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MESNRAGQLT GKEIHGFRTL QDLDIPSILE EAKMRWLRPN EIHAILCNYK YFNIFVKPVN 60 LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDLP 120 TFVRRCYWLL DKSLEHIVLV HYRETQETRG APETSVAKSS PATPVNSSSS SDPSDPSGWI 180 LSEECNSVDE QAYGASQHAN LELNRDMTAK THEQRLLEIN TLDWDELLAP NDPNKLMATQ 240 EVGGRASVGQ QSQCEVNGYS LNDGSSSMAR APIASLESFV GQVAGSNAVN FNPLNDMSFR 300 SGDGQMTSNF QKKESGVMTV GAGDSSDSLN KDGLQTQDSF GRWINYFISD SSGSADELMT 360 PESSVTIDQS YVMQQTFNIT EISPSWALST EETKILVVGH FPGRQSPLAK SNLFCVCADV 420 CFTAEFVQSG VYRCVISPQA PGLVNLYLSL DGNTPISQVM TFEFRAPSAH KWTDPLEDQS 480 NWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QNSLKDAKKF VRKCAYITNN WAYLIKSIEG 540 RKVPSMHAKD CLFELSLQTK FHEWLLERVI EGCKTSERDE QGQGVIHLCA ILGYTWAIYP 600 FTWSGLSVDY RDKHGWTALH WAAHYGREKM VAALLSAGAN PNLVTDPNSE NPDGYTAADL 660 ASKNGFDGLG AYLAEKALVA HFEAMTLAGN VSGSLQTTTE PINPENFTEE ELYLKDTLAA 720 YRTAADAAAR IQAAFREQSF KLQTKAVEYV NQETEARNII AAMKIQHAFR NYESRKKLAA 780 AARIQYRFRT WKMRKDFLAM RRHAIKIQAV FRGYKERKQY RKIVWSVGVL EKAVLRWRLK 840 RKGFRGLQVQ SSESVDIKPD GEVEDFFRAS RKQAEERVER SVVRVQAMFR SKRAQEEYSR 900 MKMEHNNASL EYKRLINPDN

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MESNRAGQLT GKEIHGFRTL QDLDIPSILE EAKMRWLRPN EIHAILCNYK YFNIFVKPVN  60
LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDLP  120
TFVRRCYWLL DKSLEHIVLV HYRETQETRG APETSVAKSS PATPVNSSSS SDPSDPSGWI  180
LSEECNSVDE QAYGASQHAN LELNRDMTAK THEQRLLEIN TLDWDELLAP NDPNKLMATQ  240
EVGGRASVGQ QSQCEVNGYS LNDGSSSMAR APIASLESFV GQVAGSNAVN FNPLNDMSFR  300
SGDGQMTSNF QKKESGVMTV GAGDSSDSLN KDGLQTQDSF GRWINYFISD SSGSADELMT  360
PESSVTIDQS YVMQQTFNIT EISPSWALST EETKILVVGH FPGRQSPLAK SNLFCVCADV  420
CFTAEFVQSG VYRCVISPQA PGLVNLYLSL DGNTPISQVM TFEFRAPSAH KWTDPLEDQS  480
NWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QNSLKDAKKF VRKCAYITNN WAYLIKSIEG  540
RKVPSMHAKD CLFELSLQTK FHEWLLERVI EGCKTSERDE QGQGVIHLCA ILGYTWAIYP  600
FTWSGLSVDY RDKHGWTALH WAAHYGREKM VAALLSAGAN PNLVTDPNSE NPDGYTAADL  660
ASKNGFDGLG AYLAEKALVA HFEAMTLAGN VSGSLQTTTE PINPENFTEE ELYLKDTLAA  720
YRTAADAAAR IQAAFREQSF KLQTKAVEYV NQETEARNII AAMKIQHAFR NYESRKKLAA  780
AARIQYRFRT WKMRKDFLAM RRHAIKIQAV FRGYKERKQY RKIVWSVGVL EKAVLRWRLK  840
RKGFRGLQVQ SSESVDIKPD GEVEDFFRAS RKQAEERVER SVVRVQAMFR SKRAQEEYSR  900
MKMEHNNASL EYKRLINPDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566049	0.0	JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015056622.1	0.0	calmodulin-binding transcription activator 5-like
Refseq	XP_015056630.1	0.0	calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3Q7EF58	0.0	A0A3Q7EF58_SOLLC; Uncharacterized protein
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]