PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g026110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 286aa MW: 32116 Da PI: 8.3896 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 105.7 | 6.3e-33 | 110 | 280 | 4 | 169 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsevsPil 91 lL + Ae++s+++ +a +lL + asp+g+p+qR++ yf+e L++r+++ ++++ + + + +++ ++++l+ ++ ++ P+ Sopen01g026110.1 110 LLQDSAEMFSKRHYDRAMELLRLCNLSASPSGNPVQRVVYYFAESLQNRINK-GTGIQPIAaKIDAVNPNIMEDVLMDPRTdvieTEQMLPFR 201 67789**********************************************9.6666655534455555557777777766777899****** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA 169 k++++t qaIl++v++ +r+H iDf+i+ G QW L+qaL e pp +l+iT+vg + +e t + L kfA Sopen01g026110.1 202 KVTQFTGIQAILDSVKSFKRIHLIDFGIKTGSQWTILMQALVGNGECPPeHLKITAVGTSLIRMQEHGLITCNLLYKFA 280 ******************************************87765555********954444444445555666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.837 | 81 | 286 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-30 | 110 | 280 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDSSLANKGK NQMQRPRCAE EKKESSCLPS ASCTILQKHY CGGKMREKSH DIPSSNTSGS 60 HAPSTVSIFE MGRAQLLQRT SKKEDSCSFT SNMYYGMYPQ ALEDFELALL LQDSAEMFSK 120 RHYDRAMELL RLCNLSASPS GNPVQRVVYY FAESLQNRIN KGTGIQPIAA KIDAVNPNIM 180 EDVLMDPRTD VIETEQMLPF RKVTQFTGIQ AILDSVKSFK RIHLIDFGIK TGSQWTILMQ 240 ALVGNGECPP EHLKITAVGT SLIRMQEHGL ITCNLLYKFA KVWIHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-16 | 136 | 282 | 32 | 173 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169309.1 | 1e-127 | PREDICTED: DELLA protein RGL3-like | ||||
TrEMBL | M1BZ59 | 1e-126 | M1BZ59_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056229 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 8e-16 | GRAS family protein |