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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen01g026100.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 330aa MW: 37589.3 Da PI: 5.2494 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g026100.1 | genome | spenn | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 189.5 | 2.2e-58 | 34 | 327 | 4 | 296 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl......fse 86
lL + Ae++s+++ e+a++lL+ + asp+g+p+qR++ ++ eA ++r++++ +++ l+ + + + +eel+ ++
Sopen01g026100.1 34 LLQASAEMFSKRHYERATELLSLCNLSASPTGTPVQRVVYCYSEAQRERINKEKKSITG-LQLDRLVDFEvkpiGVEELSLC-PkphviaCYH 124
67788***********************************************7666664.3333322211223433333333.134556799* PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfe 177
+ P+++++++++ +aIl+ ++e+r+H iDf+i G++W L+qaLa+R + p l+iT++g k+ + +tg+rL++fA e+++ pf
Sopen01g026100.1 125 ALPFYQVAQFACIEAILDNGKSERRLHLIDFGIRSGAHWTILMQALANRGDCPLdLLKITAIGT----YKQVVDQTGKRLSSFAaENMNCPFF 213
*************************************************9554449********....9**************73679***** PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
fn+ v+++++dl+ + ++++++E++ V + + l +l+ + +le vL+++ sl+P v+ v+e ea+ n++ F++rf e++ y++lfd+
Sopen01g026100.1 214 FNA-VVSEMKDLSKDLFELDTNEVVEVYSEYVLGGMLAWPNHLEV----VLRFIESLNPCVIMVIETEANINKPIFMDRFNESVFLYATLFDC 301
***.7999****************************966666655....******************************************** PP
GRAS 271 leaklpreseerikvErellgreivn 296
le+ +++++++r+ Er +l++ + n
Sopen01g026100.1 302 LETFMGPDNQHRMEFERLVLRKILHN 327
*****************988765555 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MSKKEDDPSI ASQPLNSHSD MSLEVSYDLQ LALLLQASAE MFSKRHYERA TELLSLCNLS 60
ASPTGTPVQR VVYCYSEAQR ERINKEKKSI TGLQLDRLVD FEVKPIGVEE LSLCPKPHVI 120
ACYHALPFYQ VAQFACIEAI LDNGKSERRL HLIDFGIRSG AHWTILMQAL ANRGDCPLDL 180
LKITAIGTYK QVVDQTGKRL SSFAAENMNC PFFFNAVVSE MKDLSKDLFE LDTNEVVEVY 240
SEYVLGGMLA WPNHLEVVLR FIESLNPCVI MVIETEANIN KPIFMDRFNE SVFLYATLFD 300
CLETFMGPDN QHRMEFERLV LRKILHNVHL
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