PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g024140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 408aa    MW: 44661.2 Da    PI: 4.8078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g024140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32158216159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK vk+s+fprsY+rCt a+C vkk+vers+ dp++v++tYeg H+h+
  Sopen01g024140.1 158 LDDGFRWRKYGQKAVKNSPFPRSYFRCTIATCGVKKRVERSSADPSTVITTYEGVHTHP 216
                       59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-32143218IPR003657WRKY domain
SuperFamilySSF1182902.48E-28150218IPR003657WRKY domain
PROSITE profilePS5081130.021153218IPR003657WRKY domain
SMARTSM007747.1E-39158217IPR003657WRKY domain
PfamPF031062.6E-25159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSAFFPDESS SFFFDFPLYE TENVSSSPMR LIESMFTSHD DPITDSSSLF DLLQPPPFPP  60
PPPPPPPPPP PPPPADVPLL NPSPIANTSA NSSELSSSST DVAANDDFLQ MIEMVEEQLE  120
NDEDKIEDNI QLIPKKKKAR KERAPRFAFM TKTEIDHLDD GFRWRKYGQK AVKNSPFPRS  180
YFRCTIATCG VKKRVERSSA DPSTVITTYE GVHTHPCPIT PRSSIGFYRD TIDYCGGGSI  240
GGVGLGLGGV ASSSSLFLPE FNYQAQQQQP STYFQARPAL PPINSFTTNS AQGGMLLPST  300
SSSFGTDDGL LQDMVISQMM PKQNQSTKAV GYSSETLGHD SAFGPTVRNS FFPETTYLFY  360
HIRSAAAEPL MISKAPTHLS LLKTLRLLFG DSMGTGQVET PFPESLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-251512181077Probable WRKY transcription factor 4
2lex_A1e-251512181077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087337.10.0probable WRKY transcription factor 48
TrEMBLA0A3Q7EEW61e-176A0A3Q7EEW6_SOLLC; Uncharacterized protein
STRINGSolyc01g058540.2.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-38WRKY DNA-binding protein 48