PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g023280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 287aa    MW: 33021.9 Da    PI: 7.3105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g023280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-182774148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd  l ++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
  Sopen01g023280.1 27 RGPWTVEEDFTLMNYIAHHGEGRWNTLARCAGLKRTGKSCRLRWLNYL 74
                      89********************************************97 PP
2Myb_DNA-binding51.52.3e-1680123146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sopen01g023280.1  80 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6652274IPR017930Myb domain
SuperFamilySSF466896.36E-3124121IPR009057Homeodomain-like
SMARTSM007175.8E-142676IPR001005SANT/Myb domain
PfamPF002498.1E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-222881IPR009057Homeodomain-like
CDDcd001672.00E-102974No hitNo description
PROSITE profilePS5129423.24675129IPR017930Myb domain
SMARTSM007171.3E-1479127IPR001005SANT/Myb domain
PfamPF002494.6E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2382128IPR009057Homeodomain-like
CDDcd001673.97E-7100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDHQHVKVNL SRGDAKNKNE DDMDLRRGPW TVEEDFTLMN YIAHHGEGRW NTLARCAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AGAGASTSSE VINPQNIVQI  180
DHNTCVTNSS TATASSDNSF GTPVSDLTDC CYNYPQQQQD CFQLVGESLI SPTGYFHHAL  240
EFQGAAAAAI DHQQNTTQWM DGANFSDNLW NIEDMWFLQQ QLNNNVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242412724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084699.10.0transcription factor MYB78-like
SwissprotQ9FGY33e-95MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A3Q7EEG30.0A0A3Q7EEG3_SOLLC; Uncharacterized protein
STRINGSolyc01g057910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-91myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]