PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g018650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 385aa    MW: 43845.7 Da    PI: 4.5096
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g018650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-392313311101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk lrr+C +dC l pyfp ++p kf ++hk+FGasn++k+l++lp ++r da++slvyeA+ar+rdP+yG++gvi++l+ q+ +l+a+
  Sopen01g018650.1 231 PCAACKCLRRRCLEDCLLKPYFPPNEPMKFIVAHKIFGASNIIKVLQDLPATQRGDAVNSLVYEANARMRDPIYGSAGVISHLHDQMTKLQAQ 323
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       +al+++++
  Sopen01g018650.1 324 VALAQAQI 331
                       ***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF044342.1E-4146178IPR007527Zinc finger, SWIM-type
PROSITE profilePS509668.728150182IPR007527Zinc finger, SWIM-type
SMARTSM005750.0096157184IPR006564Zinc finger, PMZ-type
PROSITE profilePS5089124.878230331IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-38231328IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MANFEHNVMV ALYWGGEIIT EMNGCRENEN NVDPYSDVNA EISEESSEED EPSKDDGESE  60
SDEDINNARD FSQNDIGINL PNQFEKDVSE VQNDVPYFRK LDNEEDIFMC TCESEMEYCS  120
VWSEDGTKDL KKGVYEVRSI QVDGTGGNPH CVSLNERKCD CGKWVNLHFP CSHVMKVTDR  180
MGEIARNFVS EHFTVENYVT TYSGSFSPVG HKAYWPSPNF RMEKNRNLFT PCAACKCLRR  240
RCLEDCLLKP YFPPNEPMKF IVAHKIFGAS NIIKVLQDLP ATQRGDAVNS LVYEANARMR  300
DPIYGSAGVI SHLHDQMTKL QAQVALAQAQ ISNLQSQNAN LMTLIPYQQS LSDHHYTFQN  360
STPLSYDNNT DIWHLGDTTW NSFWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3423033110111LOB family transfactor Ramosa2.1
5ly0_B6e-3423033110111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-34LOB domain-containing protein 1