PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g009840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 295aa    MW: 31475.5 Da    PI: 9.3617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g009840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.1e-09104128226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+lC  +     Ck+Gd+C+FaHg
  Sopen01g009840.1 104 KTRLCTKYNTAEGCKFGDQCRFAHG 128
                       8***********************9 PP
2zf-CCCH29.31.5e-09262286126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykt++C +f +  tC +G++C+FaHg
  Sopen01g009840.1 262 YKTKICENFTK-STCTFGEKCHFAHG 286
                       9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8923765IPR000571Zinc finger, CCCH-type
SMARTSM003564.53764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-63962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-13100133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-7101132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488103130IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0059104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-15167245IPR004088K Homology domain, type 1
SMARTSM003222.5E-12172242IPR004087K Homology domain
PROSITE profilePS5008414.34173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.0E-16173244IPR004088K Homology domain, type 1
CDDcd001053.75E-15175237No hitNo description
PfamPF000138.2E-11175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.7E-15259292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-8260291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6261287IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEFDGGRKRG RPQGPMNGNG GFKKSKQELE SIPTGIGSKS KPCTKFFSFS GCPFGEGCHF  60
LHYVPGGLKA VTQMLGSNPA LPAAPRNSIA PPSFPDGSSS PVVKTRLCTK YNTAEGCKFG  120
DQCRFAHGDW ELGRPAAPLH EESHGMFQMH GRYGSRPETN PAGLGAAASF GSSATAKISV  180
DASLAGRIIG KGGVNSKHIC RVTGAKFSIR DNESDPNLRN IELEGTIDQI EQASRMVREL  240
IQSVTSAAPP MKNTSSSVTS NYKTKICENF TKSTCTFGEK CHFAHGAEEL RKSGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063109.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7EUP20.0A0A3Q7EUP2_SOLLC; Uncharacterized protein
STRINGXP_009628588.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-50C3H family protein