PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g004560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 527aa    MW: 57552.6 Da    PI: 5.0918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g004560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-162673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed +lvd+v  +G g+W+++ r+ g+ R++k+c++rw ++l
  Sopen01g004560.1 26 KGPWTSAEDVILVDYVMTHGEGNWNAVQRHSGLARCGKSCRLRWANHL 73
                      79******************************************9986 PP

2Myb_DNA-binding53.17.4e-1779122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE++++v++++++G++ W++ a +++ gRt++++k++w++
  Sopen01g004560.1  79 KGAFTPEEEQRIVELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 122
                       799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9372173IPR017930Myb domain
SuperFamilySSF466898.24E-2923120IPR009057Homeodomain-like
SMARTSM007171.5E-122575IPR001005SANT/Myb domain
PfamPF002494.8E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-232780IPR009057Homeodomain-like
CDDcd001675.63E-102873No hitNo description
PROSITE profilePS5129425.44574128IPR017930Myb domain
SMARTSM007177.7E-1678126IPR001005SANT/Myb domain
PfamPF002493.3E-1579122IPR001005SANT/Myb domain
CDDcd001671.65E-1181122No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2581127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MTSKLDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN AVQRHSGLAR  60
CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI VELHAKMGNK WARMAVELPG RTDNEIKNYW  120
NTRIKRRQRA GLPIYPADIS FMASQNKQNE ELGAFSSADA QNPDVLGINN FEIPAVEFKK  180
LELTHLLYPP QLADIPARSL LNDPVSNFLA QGHRAPYSST YFLSTTYPAK RIRGSESVFS  240
GSNGDLLNSL QYQNDGSLLA QAQAQPLDFS SYNHNLTYDD QRAISNIVPG GHAYLNGNSS  300
SEPTWAMKLE LPSLQNQTEN WGSPHSALPS LDSVDILIQS PPAGHSESGS LSPSNSGLLD  360
AVLHESQTMK ASNDNSYQGN KTSGNAVNNS CPDLKGCDIY GHPVSPLSQF SASVFSDYAP  420
ISESSLHEFP SMATMPGGEI KQEIGDLSPL DDEDNTSNQT IFSSPKTQHA NNHLASKDPF  480
GSCFFDDCDW DCKQIHAVTT SSGQANGHNS CSWDAISAME ATGRMRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29241275107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1754740.0EF175474.1 Solanum lycopersicum GAMyb-like1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076221.10.0transcription factor GAMYB
RefseqXP_015076298.10.0transcription factor GAMYB
TrEMBLA0A3Q7E9E50.0A0A3Q7E9E5_SOLLC; Uncharacterized protein
STRINGSolyc01g009070.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-75myb domain protein 33