PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g004560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 527aa MW: 57552.6 Da PI: 5.0918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v +G g+W+++ r+ g+ R++k+c++rw ++l Sopen01g004560.1 26 KGPWTSAEDVILVDYVMTHGEGNWNAVQRHSGLARCGKSCRLRWANHL 73 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++++v++++++G++ W++ a +++ gRt++++k++w++ Sopen01g004560.1 79 KGAFTPEEEQRIVELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 122 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.937 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.63E-10 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 25.445 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-16 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-11 | 81 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 81 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MTSKLDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN AVQRHSGLAR 60 CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI VELHAKMGNK WARMAVELPG RTDNEIKNYW 120 NTRIKRRQRA GLPIYPADIS FMASQNKQNE ELGAFSSADA QNPDVLGINN FEIPAVEFKK 180 LELTHLLYPP QLADIPARSL LNDPVSNFLA QGHRAPYSST YFLSTTYPAK RIRGSESVFS 240 GSNGDLLNSL QYQNDGSLLA QAQAQPLDFS SYNHNLTYDD QRAISNIVPG GHAYLNGNSS 300 SEPTWAMKLE LPSLQNQTEN WGSPHSALPS LDSVDILIQS PPAGHSESGS LSPSNSGLLD 360 AVLHESQTMK ASNDNSYQGN KTSGNAVNNS CPDLKGCDIY GHPVSPLSQF SASVFSDYAP 420 ISESSLHEFP SMATMPGGEI KQEIGDLSPL DDEDNTSNQT IFSSPKTQHA NNHLASKDPF 480 GSCFFDDCDW DCKQIHAVTT SSGQANGHNS CSWDAISAME ATGRMRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 24 | 127 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF175474 | 0.0 | EF175474.1 Solanum lycopersicum GAMyb-like1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076221.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_015076298.1 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | A0A3Q7E9E5 | 0.0 | A0A3Q7E9E5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g009070.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 2e-75 | myb domain protein 33 |