PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g003750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 249aa MW: 26090.2 Da PI: 9.2448 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.7 | 8.5e-38 | 31 | 116 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s + Sopen01g003750.1 31 TVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVT 116 689******************************************************************87743333333333..222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-34 | 37 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSTSVEQNGA VLLDSTAGSG GGVANSNGAL TVKKPPAKDR HSKVDGRGRR IRMPIVCAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVTASAP 120 VDHKFPSPSP SLLHPLISPA PFLLGKRLRS EDDDNGSGDK DVVPSAGFWA VPARPDFGQV 180 WSFAAPSPEI SHSAAAAMNT QPSRFLQQQM EEASAGRVGN YFPIAQGHLN LLASLSGSGS 240 GPRRDDDGQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062295.1 | 0.0 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-80 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G3BGV5 | 1e-178 | G3BGV5_SOLLC; TCP transcription factor 15 | ||||
STRING | Solyc01g008230.2.1 | 1e-179 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-72 | TCP family protein |