PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g001670.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 308aa MW: 35005 Da PI: 6.6175

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g001670.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++v + G g+W+t +++ g+ R++k+c++rw +yl Sopen01g001670.1 30 RGPWTPEEDELLTNYVSKEGEGRWRTLPKKAGLFRCGKSCRLRWMNYL 77 89********************************************97 PP
2	Myb_DNA-binding	51.5	2.4e-16	83	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Sopen01g001670.1 83 RGHISPEEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128 67779***************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.132	25	77	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-30	27	124	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-14	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	30	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-23	31	84	IPR009057	Homeodomain-like
CDD	cd00167	4.51E-11	32	77	No hit	No description
PROSITE profile	PS51294	25.837	78	132	IPR017930	Myb domain
SMART	SM00717	9.2E-16	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-15	83	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-25	85	133	IPR009057	Homeodomain-like
CDD	cd00167	1.91E-12	87	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MRTPSSSSSS SLSSRTKIVT PCCTKIGLKR GPWTPEEDEL LTNYVSKEGE GRWRTLPKKA 60 GLFRCGKSCR LRWMNYLRPS VKRGHISPEE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI 120 KNYWNTHLSK KLINQGIDPR THKPLILNNP NSSNSDDNHI ITNKANSSSP SSSSKLANNY 180 NLNTINIPNP IYTPNFQMKE PLRSSINNNN CPGETTSPDD DYQYQSSNVM LANYRDDDMN 240 VVVHDEGDDE MNCCADDVFS SFLNSLINED MFMNCQNQQI NGTLQDFDHF MASSTPSYDQ 300 NNLKTMDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-26	28	132	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015062755.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	1e-82	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A0V0I492	0.0	A0A0V0I492_SOLCH; Putative transcription repressor MYB5-like (Fragment)
STRING	Solyc01g005660.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-79	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]