PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g001650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28987 Da PI: 6.6791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+WvAeI+ + ++ r +lg+f++aeeAa+a+++a+ l+g Sopen01g001650.1 27 KFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDSAEEAARAYDEAACLLRG 76 799******.7******99932...36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 27 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.99E-33 | 27 | 83 | No hit | No description |
PROSITE profile | PS51032 | 19.664 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 27 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEQQQQQQLQ LHNPIKKFSP KLQKQRKFVG VRQRPSGKWV AEIKNTTQKI RMWLGTFDSA 60 EEAARAYDEA ACLLRGSNAR TNFHNHTPVS PALSMKIRNL INHKKSLNKI NHKSTSTSST 120 STRASSSSIP TSATSHQESQ ISNDDAYKPD LNFYDQITSS NFDHTSTFTN DFDTILLDDE 180 NVDNFHDVVP KEIIEDHTQF ENMRVERQIS ASLYAMNGVN EYWDNFHDSS NNNNNDATYW 240 DLPMLYQMFC PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 27 | 83 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769900.1 | 0.0 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A3Q7E7F1 | 1e-139 | A0A3Q7E7F1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g005630.1.1 | 1e-136 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-30 | related to AP2 11 |