PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen00g009860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 334aa    MW: 38106.3 Da    PI: 5.0108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen00g009860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14130181155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Sopen00g009860.1 130 QRITHIAVERNRRKQMNEYLSVLRTLMPES---YVQRGDQASIVSGAINYVKELE 181
                       799***************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.24E-14128185No hitNo description
PROSITE profilePS5088815.631129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-18129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-15129185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-12130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MALEAITQQQ QYLYALLGTT NWSIGSGSGS GSDYYNNDAF DEFVPNHQNV TAPQEYEDYS  60
NWNLPAPLLV DSQNEFHQWG QNSSSVLDHN FTIVDQQEQL ESPIEMSSST TRPRRRRTRT  120
KKNDEEIENQ RITHIAVERN RRKQMNEYLS VLRTLMPESY VQRGDQASIV SGAINYVKEL  180
EQQLQFLSGK KHLTRQNQEA NGETSPFSEF FSTPQYSTTM TAAATTTTSE NVCCENEYYR  240
NQQLPATADI EVTMVENHAN LKIRSKKRPR LLPTIISGLE SLRLTVLHLN VSKVDQFVLC  300
SLSLKVEEDC KMNTVEDIAA VVNQILSRIH EEAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118RPRRRRTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331330.0AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230172.10.0transcription factor bHLH96-like
TrEMBLA0A3Q7EN260.0A0A3Q7EN26_SOLLC; Uncharacterized protein
STRINGSolyc01g098720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-72bHLH family protein