PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_215690_ridj.t1

Common Name

SOVF_215690

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 388aa MW: 43323.3 Da PI: 7.3434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_215690_ridj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.6	2.9e-54	23	148	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yLk+kv++++l++ +i+e+d+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v Sp_215690_ridj.t1 23 LPPGFRFHPTDEELVVHYLKRKVQSTPLPV-AIIAEIDLYKFDPWELPAKAVFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPV 113 79**************************.88***********8777899********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 ls+++e+vg+kk Lvfy g+ p+g+kt+W+mheyr Sp_215690_ridj.t1 114 LSTGNEKVGVKKALVFYGGKPPRGVKTNWIMHEYR 148 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-64	19	187	IPR003441	NAC domain
PROSITE profile	PS51005	60.665	23	187	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDSTHSPAAG GSHHELQESH PQLPPGFRFH PTDEELVVHY LKRKVQSTPL PVAIIAEIDL 60 YKFDPWELPA KAVFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVLSTGNEK 120 VGVKKALVFY GGKPPRGVKT NWIMHEYRWV DSTKPTNNKP PGYDHCNNKK GGSLRLDDWV 180 LCRIYKKSNT SRAMDHERED SMEDMMMMGT SLSSMSMSMS MSMSMSIPSS INNMGHDQPL 240 SKPTTNSLNY GSFLNTHVDQ QGLFEGMMGG GVHVHHQGMD PGTPTSMLPL KRSLPSLYWG 300 DNNDHDTSGG AICGAQSPSK RLSMLQMSID NTNNNNSSEE SGGRSDHHEN NNNNNNNITS 360 MSNLLNQLPT QTTPPPPLHQ QQQQQQQQ

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDSTHSPAAG GSHHELQESH PQLPPGFRFH PTDEELVVHY LKRKVQSTPL PVAIIAEIDL  60
YKFDPWELPA KAVFGEQEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD KPVLSTGNEK  120
VGVKKALVFY GGKPPRGVKT NWIMHEYRWV DSTKPTNNKP PGYDHCNNKK GGSLRLDDWV  180
LCRIYKKSNT SRAMDHERED SMEDMMMMGT SLSSMSMSMS MSMSMSIPSS INNMGHDQPL  240
SKPTTNSLNY GSFLNTHVDQ QGLFEGMMGG GVHVHHQGMD PGTPTSMLPL KRSLPSLYWG  300
DNNDHDTSGG AICGAQSPSK RLSMLQMSID NTNNNNSSEE SGGRSDHHEN NNNNNNNITS  360
MSNLLNQLPT QTTPPPPLHQ QQQQQQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-77	11	192	1	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-77	11	192	1	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-77	11	192	1	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-77	11	192	1	170	NO APICAL MERISTEM PROTEIN
4dul_A	6e-77	11	192	1	170	NAC domain-containing protein 19
4dul_B	6e-77	11	192	1	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864744.1	0.0	NAC transcription factor 56
Swissprot	Q9LD44	3e-98	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0K9Q8A9	0.0	A0A0K9Q8A9_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010675608.1	1e-145	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-94	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]