PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_213220_watr.t2
Common NameSOVF_213220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 541aa    MW: 60681.7 Da    PI: 7.2431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_213220_watr.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.65e-36592021128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+ e+L++kvegk+ + ++        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  Sp_213220_watr.t2  59 LPAGVKFDPTDQELI-EHLEAKVEGKSSKSSHplidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 148
                        799************.99*********44433444454444766646**********.555666799******************7333455 PP

                NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sp_213220_watr.t2 149 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 202
                        5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-3950221IPR003441NAC domain
PROSITE profilePS5100532.6559221IPR003441NAC domain
PfamPF023653.0E-1660202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MNISNKTQLN SISTASDLID AKLEEHQLCG SKHCPGCGHK LEGSKPFLEY FWGQDWVGLP  60
AGVKFDPTDQ ELIEHLEAKV EGKSSKSSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG  120
LSRHFFHRPS KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL  180
YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWT SERTATTGDG  240
SEPSGRRESG SGSGSTSSSK EVITHHNRDD QMSISAGVVG GGAAAAAAVA AAAALSSFTA  300
LDMQHLRATA EQFSFVPFSR KTFDEAGIGD ASTTVRESAS MSAVCDNHEQ RQQQQQQQQQ  360
QQQQQHHHHL HHNPHAMNAP QDHHHHHHTH QSITTSAAFH MNRPSNPISQ IISPPPLHHA  420
SIILDDDSFH HVSRMLQNQN FHHQQQQQNQ QQQQQQQQHQ QQHQQTTQQQ QQQQHHHKLA  480
ARSGAGLEEI IMGCTSSASP SASGGIKEES SLTNPPTEAD WMKYSTFWHD PDHSDHHHHH  540
G
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850611.10.0myb-like protein Q isoform X2
SwissprotQ9M0F81e-168NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0K9Q7640.0A0A0K9Q764_SPIOL; Uncharacterized protein
STRINGXP_010688374.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-138NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]