PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_213220_watr.t1

Common Name

SOVF_213220

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 533aa MW: 59610.5 Da PI: 7.3091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_213220_watr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.7	4.9e-36	51	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L++kvegk+ + ++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ Sp_213220_watr.t1 51 LPAGVKFDPTDQELI-EHLEAKVEGKSSKSSHplidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 140 799**********.99*****44433444454444766646******.555666799**************7333455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Sp_213220_watr.t1 141 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 194 5544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-38	46	213	IPR003441	NAC domain
PROSITE profile	PS51005	32.65	51	213	IPR003441	NAC domain
Pfam	PF02365	2.9E-16	52	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MNISNKTQLN SISTASDLID AKLEEHQLCG SKHCPGCGHK LEGSKPDWVG LPAGVKFDPT 60 DQELIEHLEA KVEGKSSKSS HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSRHFFHR 120 PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR 180 KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WTSERTATTG DGSEPSGRRE 240 SGSGSGSTSS SKEVITHHNR DDQMSISAGV VGGGAAAAAA VAAAAALSSF TALDMQHLRA 300 TAEQFSFVPF SRKTFDEAGI GDASTTVRES ASMSAVCDNH EQRQQQQQQQ QQQQQQQHHH 360 HLHHNPHAMN APQDHHHHHH THQSITTSAA FHMNRPSNPI SQIISPPPLH HASIILDDDS 420 FHHVSRMLQN QNFHHQQQQQ NQQQQQQQQQ HQQQHQQTTQ QQQQQQHHHK LAARSGAGLE 480 EIIMGCTSSA SPSASGGIKE ESSLTNPPTE ADWMKYSTFW HDPDHSDHHH HHG

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MNISNKTQLN SISTASDLID AKLEEHQLCG SKHCPGCGHK LEGSKPDWVG LPAGVKFDPT  60
DQELIEHLEA KVEGKSSKSS HPLIDEFIPT IEGEDGICYT HPEKLPGVTR DGLSRHFFHR  120
PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN GKQKGCKKIL VLYTNFGKNR  180
KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WTSERTATTG DGSEPSGRRE  240
SGSGSGSTSS SKEVITHHNR DDQMSISAGV VGGGAAAAAA VAAAAALSSF TALDMQHLRA  300
TAEQFSFVPF SRKTFDEAGI GDASTTVRES ASMSAVCDNH EQRQQQQQQQ QQQQQQQHHH  360
HLHHNPHAMN APQDHHHHHH THQSITTSAA FHMNRPSNPI SQIISPPPLH HASIILDDDS  420
FHHVSRMLQN QNFHHQQQQQ NQQQQQQQQQ HQQQHQQTTQ QQQQQQHHHK LAARSGAGLE  480
EIIMGCTSSA SPSASGGIKE ESSLTNPPTE ADWMKYSTFW HDPDHSDHHH HHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021850614.1	0.0	myb-like protein Q isoform X5
Swissprot	Q9M0F8	1e-170	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0K9Q905	0.0	A0A0K9Q905_SPIOL; Uncharacterized protein
STRING	XP_010688374.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]