PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_212490_ssmj.t1 | ||||||||
Common Name | SOVF_212490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14710.9 Da PI: 6.9301 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 7.9e-12 | 60 | 97 | 4 | 43 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 WT+ E ++l++av + + Wk++a+ +g gRt+ +++++ Sp_212490_ssmj.t1 60 WTEKETLQLLEAVMHYRDD-WKRVAEQVG-GRTDTSIIHH 97 *****************88.*********.*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.847 | 55 | 106 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-6 | 56 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-10 | 56 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 57 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-8 | 60 | 97 | No hit | No description |
Pfam | PF00249 | 3.1E-11 | 60 | 97 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MKPEGDPNVT ISWELHIQCR CPRYLKLLFY GCYVPGNYQV GVTASEFRRV EISEPVKAGW 60 TEKETLQLLE AVMHYRDDWK RVAEQVGGRT DTSIIHHSMI LATQLWLREA TLTLTTELPS 120 MRQALFGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling. {ECO:0000269|PubMed:12140326, ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636, ECO:0000269|PubMed:19033529}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021858681.1 | 2e-88 | uncharacterized protein LOC110797862 isoform X5 | ||||
Swissprot | Q84JG2 | 2e-21 | SWI3B_ARATH; SWI/SNF complex subunit SWI3B | ||||
TrEMBL | A0A0K9Q7B2 | 2e-91 | A0A0K9Q7B2_SPIOL; Uncharacterized protein | ||||
STRING | POPTR_0002s00620.1 | 2e-27 | (Populus trichocarpa) |