PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_209690_axnw.t1 | ||||||||
Common Name | SOVF_209690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 27227.8 Da PI: 7.9866 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100 | 2.3e-31 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l Sp_209690_axnw.t1 2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHL 93 6******************************************************************************************* PP DUF260 88 eqlkael 94 +q+ +e+ Sp_209690_axnw.t1 94 CQAGVET 100 **98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.826 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-26 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHLCQAGVET ILRGGTLRPI SEFLVGAPPS 120 PIPTSVETDE ISEVFCPPKP NTTTAATNPN PNTWRKQIGV NMMKQDLNGN YNNNKRSRSS 180 PPPPKFKKEE EDYKQLDLSL TPPTFLHAPS QQRPGTPSLN SEESAATTVS FESDNYNYQP 240 KLLNLFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021837602.1 | 0.0 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9FN11 | 2e-77 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0K9Q7W4 | 0.0 | A0A0K9Q7W4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679613.1 | 1e-126 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-74 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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