PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_209410_pcum.t1
Common NameSOVF_209410
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20683.2 Da    PI: 7.4398
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_209410_pcum.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65e-212169149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+i nk+ +qvtfskRr+g++KKA+EL  LC+ e+a+i fs  gkl+ +
  Sp_209410_pcum.t1 21 KPIINKTSKQVTFSKRRTGLFKKASELGLLCGSEIAIITFSGAGKLFSF 69
                       6799******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.2311373IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-281372IPR002100Transcription factor, MADS-box
CDDcd002653.50E-321486No hitNo description
SuperFamilySSF554551.05E-251487IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-201535IPR002100Transcription factor, MADS-box
PfamPF003194.1E-222369IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-203550IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-205071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEEVVHTEKK KRTGKRKIEI KPIINKTSKQ VTFSKRRTGL FKKASELGLL CGSEIAIITF  60
SGAGKLFSFG HPTADAVIHR YINQSNCINV ENSNDDNGNY NENNFGQLSE QYKKVLSNIE  120
VEKRKADVAP SSSSSNGGLG FWWDQPIDNL GVFELEQLKN SLEGFRDEIC SRIGSSLFDD  180
IDFGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-161485273Myocyte-specific enhancer factor 2B
1tqe_Q8e-161485273Myocyte-specific enhancer factor 2B
1tqe_R8e-161485273Myocyte-specific enhancer factor 2B
1tqe_S8e-161485273Myocyte-specific enhancer factor 2B
6c9l_A8e-161485273Myocyte-specific enhancer factor 2B
6c9l_B8e-161485273Myocyte-specific enhancer factor 2B
6c9l_C8e-161485273Myocyte-specific enhancer factor 2B
6c9l_D8e-161485273Myocyte-specific enhancer factor 2B
6c9l_E8e-161485273Myocyte-specific enhancer factor 2B
6c9l_F8e-161485273Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853088.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A0K9Q8431e-133A0A0K9Q843_SPIOL; Uncharacterized protein
STRINGXP_010674587.18e-52(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36AGAMOUS-like 62