PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_201140_jppd.t1
Common NameSOVF_201140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 342aa    MW: 37009.2 Da    PI: 4.7029
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_201140_jppd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35351262102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y +++d+ +++lisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k l
  Sp_201140_jppd.t1  35 FLTKTYLLVDDPVVDDLISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFANDCFKRGEKAL 117
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Sp_201140_jppd.t1 118 LRDIQRRKI 126
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5831124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3732124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MIPVPLDQNG DSTGCGGTGS GNASDLQQRT LPTPFLTKTY LLVDDPVVDD LISWNDDGTS  60
FIVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVIP DRWEFANDCF KRGEKALLRD  120
IQRRKISPAP AINSPTAVAA CPTAIPAVVT VAAPPPVTVR AVSPANSGDE QVHSSNSSPA  180
PGVVTVQRVA SCASTTEILE ENERLRSENF TLSQELNHLR GLCNNILAMM SNYATGQPET  240
SGLQEGRPLD LLPTKPVTVA EADPCGASSG GATASGGSKG EEKMEEEEME GCPCPRLFGV  300
SIGAKRVRRE DDEENRASVE RSRSREGSDP IQTQQEQQCS GE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-273512410110Heat shock factor protein 1
5hdn_A2e-273512410110Heat shock factor protein 1
5hdn_B2e-273512410110Heat shock factor protein 1
5hdn_C2e-273512410110Heat shock factor protein 1
5hdn_D2e-273512410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863251.10.0heat stress transcription factor B-2b
SwissprotQ9T0D32e-90HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0K9QAJ40.0A0A0K9QAJ4_SPIOL; Uncharacterized protein
STRINGXP_010676525.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-77HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]