PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_200660_fcea.t1 | ||||||||
Common Name | SOVF_200660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 669aa MW: 74781.5 Da PI: 7.4998 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.7 | 5.3e-10 | 474 | 506 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ ++++ LA+++gLt +qV++WF N R + Sp_200660_fcea.t1 474 HPYPTDNDKQMLANQTGLTRNQVSNWFINARVR 506 89*****************************88 PP | |||||||
2 | BELL | 95.3 | 5.4e-31 | 328 | 396 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + +++kakLl ++eeV+kr+kqy++q+q+v+s+F+ v gl +a+pY+s k+iSrhFrcLk+aia+q+ Sp_200660_fcea.t1 328 DCHERKAKLLYMQEEVCKRHKQYHQQMQMVMSAFDSVPGLSNATPYISRSIKTISRHFRCLKNAIADQL 396 6789***************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-44 | 249 | 394 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-35 | 254 | 393 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.276 | 447 | 510 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-11 | 450 | 514 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-12 | 450 | 511 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 452 | 517 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 453 | 514 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 467 | 506 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MEMRNNFMPE LHVAQQRRRD KLRVQHFEEL QQSNNFHHHQ HQHHQHQQQN SSSTSPMLLP 60 PPEMLHFMAA SHSSNPFPNI HPTRFVTPST SDSCDTHQQQ QQQQQPMQGC ENWVQRHMVV 120 PEFLVHNQTP EIDYQNNNVQ SWGSGGGGGG GGGGNELPLL PPNFISHHQS NDGGGLSLSL 180 SSNQMCEYQH IGDLRELKPF ESGTISSVVK QSMNSGIPKL ECGSNDQVQD VAGCSIQVHR 240 NVGPLGPFTG YAAILKSSKF LKPAQHILDE FLSAAGLWRG SEEDENDPSL TTSRSHNMAD 300 CSTAMVSKMD GGNDLSGRSP SYESYRPDCH ERKAKLLYMQ EEVCKRHKQY HQQMQMVMSA 360 FDSVPGLSNA TPYISRSIKT ISRHFRCLKN AIADQLKHIK RALGEDLSSP TSFLRGDSSS 420 SSLRYDQNFA KVRSGAIGGT GHMGQQNHVW RPQRGLPERA VSVLRAWLFD HFLHPYPTDN 480 DKQMLANQTG LTRNQVSNWF INARVRLWKP MVEEIHMLET KGSSHSEPNS NNSVMSIIEK 540 NRQAAAAGNQ SGCKPPPPPQ PSDPVCDKEL ECLVPSSSLE RSRGDQNTIN TEQLFRKCSR 600 LESHQVPSSM DNSFMGFLPY QRRGIELGGI GAVSLTLGLR HGSETTQQQL QHQFLPQGMP 660 FGGIHDFST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 456 | 514 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 456 | 514 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021864882.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0K9QCS3 | 0.0 | A0A0K9QCS3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689104.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 1e-88 | BEL1-like homeodomain 8 |