PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_200660_fcea.t1
Common NameSOVF_200660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 669aa    MW: 74781.5 Da    PI: 7.4998
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_200660_fcea.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.3e-104745062254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        ++yp+ ++++ LA+++gLt +qV++WF N R +
  Sp_200660_fcea.t1 474 HPYPTDNDKQMLANQTGLTRNQVSNWFINARVR 506
                        89*****************************88 PP

2BELL95.35.4e-31328396472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        + +++kakLl ++eeV+kr+kqy++q+q+v+s+F+ v gl +a+pY+s   k+iSrhFrcLk+aia+q+
  Sp_200660_fcea.t1 328 DCHERKAKLLYMQEEVCKRHKQYHQQMQMVMSAFDSVPGLSNATPYISRSIKTISRHFRCLKNAIADQL 396
                        6789***************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-44249394IPR006563POX domain
PfamPF075261.1E-35254393IPR006563POX domain
PROSITE profilePS5007112.276447510IPR001356Homeobox domain
SMARTSM003897.5E-11450514IPR001356Homeobox domain
CDDcd000865.57E-12450511No hitNo description
SuperFamilySSF466895.13E-17452517IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28453514IPR009057Homeodomain-like
PfamPF059202.6E-18467506IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEMRNNFMPE LHVAQQRRRD KLRVQHFEEL QQSNNFHHHQ HQHHQHQQQN SSSTSPMLLP  60
PPEMLHFMAA SHSSNPFPNI HPTRFVTPST SDSCDTHQQQ QQQQQPMQGC ENWVQRHMVV  120
PEFLVHNQTP EIDYQNNNVQ SWGSGGGGGG GGGGNELPLL PPNFISHHQS NDGGGLSLSL  180
SSNQMCEYQH IGDLRELKPF ESGTISSVVK QSMNSGIPKL ECGSNDQVQD VAGCSIQVHR  240
NVGPLGPFTG YAAILKSSKF LKPAQHILDE FLSAAGLWRG SEEDENDPSL TTSRSHNMAD  300
CSTAMVSKMD GGNDLSGRSP SYESYRPDCH ERKAKLLYMQ EEVCKRHKQY HQQMQMVMSA  360
FDSVPGLSNA TPYISRSIKT ISRHFRCLKN AIADQLKHIK RALGEDLSSP TSFLRGDSSS  420
SSLRYDQNFA KVRSGAIGGT GHMGQQNHVW RPQRGLPERA VSVLRAWLFD HFLHPYPTDN  480
DKQMLANQTG LTRNQVSNWF INARVRLWKP MVEEIHMLET KGSSHSEPNS NNSVMSIIEK  540
NRQAAAAGNQ SGCKPPPPPQ PSDPVCDKEL ECLVPSSSLE RSRGDQNTIN TEQLFRKCSR  600
LESHQVPSSM DNSFMGFLPY QRRGIELGGI GAVSLTLGLR HGSETTQQQL QHQFLPQGMP  660
FGGIHDFST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16456514563Homeobox protein Meis2
3k2a_B6e-16456514563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864882.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0K9QCS30.0A0A0K9QCS3_SPIOL; Uncharacterized protein
STRINGXP_010689104.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-88BEL1-like homeodomain 8