PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_200280_jrar.t1
Common NameSOVF_200280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 287aa    MW: 32257 Da    PI: 7.7186
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_200280_jrar.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-17173262198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v+   +l lp++f+++h  +  ++ t++l de g++++  +  rk +    l++GW++F   + L egD++vF+l++r++f  
  Sp_200280_jrar.t1 173 FIKPMLKSHVSGGFWLGLPRNFCDDHLPI--RDCTIVLVDEAGKEFDTVYLSRKAG----LSGGWRGFSIYHSLLEGDVLVFHLISRMTF-- 256
                        89************************645..5569***************555554....*************************99999.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        ++ ++r
  Sp_200280_jrar.t1 257 KIYIIR 262
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-20167263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-23169262IPR015300DNA-binding pseudobarrel domain
CDDcd100177.57E-27171262No hitNo description
PfamPF023625.1E-15173263IPR003340B3 DNA binding domain
SMARTSM010194.8E-20173264IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111173264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKNSAVSKAE LKMALVTKRL AMLQDHHEIV PVLSQVSPLQ VLPNESHPLQ CESAKLLMDP  60
SDDTLSEDVL IPKSSKNRIK FGSHKRARII SDDESYEDEE HMVSVPPPRK KGRTKQKMIK  120
INDPSNDENV AIDNPRRQKR MDLIEPSSMG EKSSSMKRPE EVQANLAAES PSFIKPMLKS  180
HVSGGFWLGL PRNFCDDHLP IRDCTIVLVD EAGKEFDTVY LSRKAGLSGG WRGFSIYHSL  240
LEGDVLVFHL ISRMTFKIYI IREQNFGEVD GALGLLTLDS RVGQHKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113PRKKGRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859784.11e-169B3 domain-containing protein Os01g0234100-like
TrEMBLA0A0K9QAR90.0A0A0K9QAR9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688081.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-43B3 family protein