PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_198490_ydyh.t1

Common Name

SOVF_198490

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 157aa MW: 17345.6 Da PI: 9.5854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_198490_ydyh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	2e-05	48	86	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Sp_198490_ydyh.t1 48 RKEKLGERIASLHQLVSPF-----GKTDTASVLTEAIGYIQFLQ 86 6778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.242	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-6	46	90	No hit	No description
SuperFamily	SSF47459	4.71E-11	46	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-8	50	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MNGSLTGTKR NAGSTSSSDQ SKASTSNNNP VAVKKSQLKV SCPPFKIRKE KLGERIASLH 60 QLVSPFGKTD TASVLTEAIG YIQFLQDQIH TLCMPHAKPS RTKPCRQPFH MGLGNEEEGK 120 EEERIELGRR GLCLVPSSWT SYLTHNQMDA SNHPSYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865844.1	1e-113	transcription factor bHLH113-like
Swissprot	Q9SFZ3	1e-34	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A0K9QBD8	1e-114	A0A0K9QBD8_SPIOL; Uncharacterized protein
STRING	XP_010679784.1	1e-80	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-29	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]