PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_198260_xksc.t1
Common NameSOVF_198260
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 278aa    MW: 30465.6 Da    PI: 4.1271
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_198260_xksc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-06344439
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       r+C+ ++e++   +C+++  +lC +C  + H+       H++
  Sp_198260_xksc.t1  3 RTCDYCGEQRSMVYCRSDLAFLCLSCDRNVHSAnalskrHSR 44
                       79*****************************65677777765 PP
2zf-B_box16.81.4e-054686438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        +C++++ +++   C d +  lC++C l +H g      H+
  Sp_198260_xksc.t1 46 LVCERCNVQPACVRCIDEGASLCQNCNLVGHDGsaassfHK 86
                       68*****************************7777777887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.399147IPR000315B-box-type zinc finger
CDDcd000215.19E-6347No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRTCDYCGE QRSMVYCRSD LAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPACVRC  60
IDEGASLCQN CNLVGHDGSA ASSFHKQQSI SYYSGCPSAA ELSKIWSFIL DPLPSSDNST  120
CPEGLGLLSI SDSGAKNCED PMGKDAGQDT MVVGDGSDPQ CVDKTSFWSG PSSIPEFFSR  180
ECPDQFECAE SSKLFYPTNR VQGIHDDPFA DLDMDEVDIN LENYDELFGV TLTHSEQLLE  240
NGGINSLFRR QGMSTTDSDD QGGFSVEVCY FLDVVNFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838782.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA95e-70COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0K9QBF50.0A0A0K9QBF5_SPIOL; Uncharacterized protein
STRINGXP_010689670.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-72B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]