PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_198240_ysyf.t1
Common NameAP3, SOVF_198240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24853.6 Da    PI: 9.4624
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_198240_ysyf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       k+ien++nrqvt+skRrng++KKA+ELSvLCda v+++++s+++kl+e+ 
  Sp_198240_ysyf.t1  9 KKIENNTNRQVTYSKRRNGLFKKANELSVLCDATVSIVMISNSNKLHEFL 58
                       68**********************************************96 PP

2K-box85.21.3e-2872169198
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        yq++ g++l++++++++q+el+kL++ ++ Lq+ +R+++G++Le+L++ eL +L++++ +s+k iR++K + + ++i++++kk ++ +e +k
  Sp_198240_ysyf.t1  72 YQAAMGVDLWAKQYQKMQEELQKLNDINRGLQKDIRRRMGDCLEDLTYHELSSLKEEMVNSVKVIRERKAKKIENHIDTTKKKVRNCNEVHK 163
                        67888999************************************************************************************ PP

              K-box  93 aLrkkl 98 
                        +L + +
  Sp_198240_ysyf.t1 164 SLLQAF 169
                        **9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.586161IPR002100Transcription factor, MADS-box
CDDcd002652.08E-36281No hitNo description
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-34395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014869.8E-1883168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.77485175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MARGKIQIKK IENNTNRQVT YSKRRNGLFK KANELSVLCD ATVSIVMISN SNKLHEFLTP  60
GTTTTKEVYD KYQAAMGVDL WAKQYQKMQE ELQKLNDINR GLQKDIRRRM GDCLEDLTYH  120
ELSSLKEEMV NSVKVIRERK AKKIENHIDT TKKKVRNCNE VHKSLLQAFD IPKDEPQYGL  180
VDNGEYNHVL GYNDDSRILA LRLQPCLMLV QDHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-14157157MEF2 CHIMERA
6byy_B7e-14157157MEF2 CHIMERA
6byy_C7e-14157157MEF2 CHIMERA
6byy_D7e-14157157MEF2 CHIMERA
6bz1_A7e-14157157MEF2 CHIMERA
6bz1_B7e-14157157MEF2 CHIMERA
6bz1_C7e-14157157MEF2 CHIMERA
6bz1_D7e-14157157MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6045140.0AY604514.1 Spinacia oleracea APETALA3 (AP3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862499.11e-153LOW QUALITY PROTEIN: floral homeotic protein DEFICIENS
SwissprotP237061e-90DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLD4N1M61e-158D4N1M6_SPIOL; APETALA3
STRINGXP_010672335.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Sather DN,Jovanovic M,Golenberg EM
    Functional analysis of B and C class floral organ genes in spinach demonstrates their role in sexual dimorphism.
    BMC Plant Biol., 2010. 10: p. 46
    [PMID:20226063]
  4. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  5. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]