PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_198240_ysyf.t1 | ||||||||
Common Name | AP3, SOVF_198240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24853.6 Da PI: 9.4624 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvt+skRrng++KKA+ELSvLCda v+++++s+++kl+e+ Sp_198240_ysyf.t1 9 KKIENNTNRQVTYSKRRNGLFKKANELSVLCDATVSIVMISNSNKLHEFL 58 68**********************************************96 PP | |||||||
2 | K-box | 85.2 | 1.3e-28 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yq++ g++l++++++++q+el+kL++ ++ Lq+ +R+++G++Le+L++ eL +L++++ +s+k iR++K + + ++i++++kk ++ +e +k Sp_198240_ysyf.t1 72 YQAAMGVDLWAKQYQKMQEELQKLNDINRGLQKDIRRRMGDCLEDLTYHELSSLKEEMVNSVKVIRERKAKKIENHIDTTKKKVRNCNEVHK 163 67888999************************************************************************************ PP K-box 93 aLrkkl 98 +L + + Sp_198240_ysyf.t1 164 SLLQAF 169 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.586 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.08E-36 | 2 | 81 | No hit | No description |
PRINTS | PR00404 | 2.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.8E-18 | 83 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.774 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MARGKIQIKK IENNTNRQVT YSKRRNGLFK KANELSVLCD ATVSIVMISN SNKLHEFLTP 60 GTTTTKEVYD KYQAAMGVDL WAKQYQKMQE ELQKLNDINR GLQKDIRRRM GDCLEDLTYH 120 ELSSLKEEMV NSVKVIRERK AKKIENHIDT TKKKVRNCNE VHKSLLQAFD IPKDEPQYGL 180 VDNGEYNHVL GYNDDSRILA LRLQPCLMLV QDHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_B | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_C | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6byy_D | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_A | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_B | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_C | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
6bz1_D | 7e-14 | 1 | 57 | 1 | 57 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY604514 | 0.0 | AY604514.1 Spinacia oleracea APETALA3 (AP3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021862499.1 | 1e-153 | LOW QUALITY PROTEIN: floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-90 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | D4N1M6 | 1e-158 | D4N1M6_SPIOL; APETALA3 | ||||
STRING | XP_010672335.1 | 1e-116 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-78 | MIKC_MADS family protein |