PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_197440_axky.t1

Common Name

SOVF_197440

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 304aa MW: 34058.8 Da PI: 9.8223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_197440_axky.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34	9.8e-11	76	179	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrnge...itkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwe 77 +++Y k++GF v++++ ++s++ ge ++ ++C + g+++ + ++ + +rt++++++gC ++ +++g+we Sp_197440_axky.t1 76 HFRKYRKQCGFGVVRAYGNYSRKAGEkrtLRSYVWKCECGGEPDLRFRTkgvkakgamitapGVLDKRTSKSKKCGCPVHMYAVADTSGTWE 167 589**********998888555441115677889***99998899999*999889999******************** PP FAR1 78 vtkleleH.nHe 88 v k + eH nH+ Sp_197440_axky.t1 168 VRKAVVEHlNHK 179 ******8886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-8	76	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
VVSDWLDAND DDILVPCGDA KLGNYDEVGN LGDESLGCTP SGKVVNCEGK GVVEEEVLAT 60 PVVGMTFSSW DRADEHFRKY RKQCGFGVVR AYGNYSRKAG EKRTLRSYVW KCECGGEPDL 120 RFRTKGVKAK GAMITAPGVL DKRTSKSKKC GCPVHMYAVA DTSGTWEVRK AVVEHLNHKP 180 TPLKSRYISM YRRDNITSVV RRRLFNGVGG GSKISNIHRS LAKERNGVEN MSISVKDLRN 240 IVAKEKKLKM RGGDVKAMFD YFDKMTAGNQ NFFHRYRLNS TNRLTDVMWV DASSRVAYQD 300 FGDI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851001.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A0K9QBN4	0.0	A0A0K9QBN4_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010689709.1	2e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-13	far-red elongated hypocotyls 3