PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194980_tmqz.t1
Common NameSOVF_194980
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34849.7 Da    PI: 6.2422
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194980_tmqz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1898151356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Sp_194980_tmqz.t1  98 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 151
                        456899***********************************************9 PP
2HD-ZIP_I/II132.31.8e-4297189193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqvk+LE++Fe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++dalk++n++L++++++L++e++
  Sp_194980_tmqz.t1  97 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFDALKSDNDALQSQNHKLQAEIM 188
                        69**************************************************************************************9997 PP

        HD-ZIP_I/II  93 e 93 
                        +
  Sp_194980_tmqz.t1 189 S 189
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1984155IPR009057Homeodomain-like
PROSITE profilePS5007116.94193153IPR001356Homeobox domain
SMARTSM003891.0E-1796157IPR001356Homeobox domain
PfamPF000462.1E-1598151IPR001356Homeobox domain
CDDcd000861.28E-1698154No hitNo description
Gene3DG3DSA:1.10.10.603.0E-19100160IPR009057Homeodomain-like
PRINTSPR000311.1E-5124133IPR000047Helix-turn-helix motif
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5133149IPR000047Helix-turn-helix motif
PfamPF021833.0E-18153193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSTTCSGMSF FPPNFMLQTP NDNDNHNHQP PSLSSILPQD FHGGLAPMLG KRSMSFTGID  60
MCEEGNNNNN HHNHNNNNNV GDEDLSDDGS QLGGGGEKKR RLNMEQVKTL EKNFELGNKL  120
EPERKMQLAK ALGLQPRQIA IWFQNRRARW KTKQLEKDYD VLKRQFDALK SDNDALQSQN  180
HKLQAEIMSL KNREPTESIN LNKDTEGSCS NRSENSSEIK LDISRTPTTT IESTLELSAH  240
PTTTAAATTT TVTGRTFFPP SSMRPNGPPV AQVLFHSPQP PVKEETFTSM FCGIDDQTGF  300
WPWIEQQNFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844606.10.0homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021844607.10.0homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-112ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0K9QE250.0A0A0K9QE25_SPIOL; Uncharacterized protein
STRINGXP_010681985.11e-178(Beta vulgaris)
STRINGXP_010683229.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-98HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]