PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_194890_eknt.t1

Common Name

SOVF_194890

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 122aa MW: 14070.9 Da PI: 9.1287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_194890_eknt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	46	67	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kCp C k F+++ L H++ H Sp_194890_eknt.t1 46 KCPFCEKEFTNSQALGGHQNAH 67 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.533	45	72	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.4E-5	46	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.16E-6	46	73	No hit	No description
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MEKIDQFSQG APIGKKLRLF GFDFDFSQNN ASNLEHDEGR VQGKRKCPFC EKEFTNSQAL 60 GGHQNAHKKE RLVMRKSQLA AKKASIEFYL RSLDHRFSSS LVYDSPFMFD SISEPLQVYV 120 PY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021741340.1	6e-48	zinc finger protein 5-like
TrEMBL	A0A0K9QEH6	1e-85	A0A0K9QEH6_SPIOL; Uncharacterized protein
STRING	EOY00328	3e-18	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-12	C2H2 family protein