PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194750_ynjz.t1
Common NameSOVF_194750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 324aa    MW: 35750.4 Da    PI: 7.8913
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194750_ynjz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.31.3e-2383127145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRC +++++++k+CErH++rgrsrsrk++e+
  Sp_194750_ynjz.t1  83 DPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMNRGRSRSRKHVES 127
                        79****************************************985 PP
2QLQ59.21.2e-20945137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       s+FT +Q+q+L++Q+l+yKyL+a++ vP++L+++iq+
  Sp_194750_ynjz.t1  9 SPFTVSQWQELEHQALIYKYLIAGVSVPADLVLPIQN 45
                       89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.8E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1611045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-141044IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.45883127IPR014977WRC domain
PfamPF088797.2E-2084126IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNRGSEGISP FTVSQWQELE HQALIYKYLI AGVSVPADLV LPIQNSFGTS SSSFFHRPTL  60
GYCGRENSLY GIGIGIGYGK KIDPEPGRCR RTDGKKWRCA KEAYPDSKYC ERHMNRGRSR  120
SRKHVESHPL TTSSPSLSTA TTSVSPLTQS LPLKYNTFAS ASSTAAPSVN PNQSQFQLDS  180
IPYAIPTKPY SRHLQGSKPE AGEHQSFSQC SGGNRSLLMD SALDNTWSST QMSSFSQSKP  240
MNNSSLHDDY SHHSLINCEF GQTQPVKQGS RSLHPFFEEW PNNRDWSGLE DESANQVSFS  300
TAQLSISVPM ASDFSTSPQS TQES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853645.10.0growth-regulating factor 5-like
TrEMBLA0A0K9QCG00.0A0A0K9QCG0_SPIOL; Uncharacterized protein
STRINGcassava4.1_009580m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-37growth-regulating factor 5