PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_194430_wacm.t1
Common NameSOVF_194430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 307aa    MW: 34001.6 Da    PI: 6.4117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_194430_wacm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025130152123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C + F ++  L  H++ H
  Sp_194430_wacm.t1 130 FSCNYCQRKFYSSQALGGHQNAH 152
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-6127157No hitNo description
PROSITE profilePS5015711.427130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVHPIPHIKE RESFYLMEQV ELEPCLSGAS STISAAHEAP PHTRLYRPLH QQYKTGKEAQ  60
LEDQYQDQDQ DQEQETVSET HIPLDLMLSN DESCHEFNAE LNLIDCLNVG SSQSSSETPQ  120
LSESCEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTIAK RNQRIGATIA ATAAAFGHPY  180
LHQQHNYSNI ASLPLHGSPN RSLGIQVHSM IHKTPANNNT MTMSSSGNVY GHQGWLRLPI  240
EQQPAVGKLV TETYHHGSTT AGPSSRGGAG RFNIVEEGVT SGGWWTGESQ IKSISEDSTN  300
LDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857062.10.0zinc finger protein 3-like
TrEMBLA0A0K9QCL90.0A0A0K9QCL9_SPIOL; Uncharacterized protein
STRINGXP_010665880.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.18e-49C2H2 family protein